Query= MSMg01no365_j13.b1 MSMg01no365_j13.b1 CHROMAT_FILE:
MSMg01no365_j13.b1 PHD_FILE: MSMg01no365_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:08 2005
(508 letters)
>mm_chr13_117426751_117427658
Length = 908
Score = 861 bits (445), Expect = 0.0
Identities = 492/511 (96%), Gaps = 7/511 (1%)
Strand = Plus / Minus
Query: 4 ggaattctaatgtgcctttccttaaacagtagcattgaaagtgttaatctgagaagatga 63
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 714 ggaattctaatgtgcatttccttaaacagtagcattgaaagtgttaatctgcgaagatga 655
Query: 64 aattgaaaccaccttttgaaactattgcagcattaattttatttcaattttgaaattctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aattgaaaccaccttttgaaactattgcagcattaattttatttcaattttgaaattctg 595
Query: 124 aggg------ttttttttaatgtagaaaaaagcattttcctgggacagtgctaatatttt 177
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 -gggttttttttttttttaatgtagaagaaagcattttcctgggacagtgctaatatttt 536
Query: 178 agagtgttgcttctcaaatattcatacaaaatgctaatgaataaaaatctaaccctggtg 237
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 535 agagtgttgcttctcaaatattcatacaaaatgctaatgaataaaaaactaaccctggta 476
Query: 238 gagattagacaactgagtaatttttacaatgaataatgaattgtatgtggaaacatgaaa 297
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 475 gagattagacaactgagtaatttttgcaatgaataaggaattgtatgtggaaacatgaaa 416
Query: 298 caatttacaatagtaagtaaacaccagtaataagttacataaagtgtacagagaaagcaa 357
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 415 caatttacaatagtaagtaaacaccagtaataaatcacataaagtgtacagagaaaccaa 356
Query: 358 ctttccatctgtttttaaaaatagcatgcgacttgtctaccttaatatgaggggaggtac 417
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 355 gtttccatctgtttttaaaaatagcatgtgacttgtctaccttaatatgaggggaggtac 296
Query: 418 ctattcttaatgcaacttgatatgctctgtttggttgacttccctaagaggcctgccttt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctattcttaatgcaacttgatatgctctgtttggttgacttccctaagaggcctgccttt 236
Query: 478 atctgaagggaaatggaggagggttggatga 508
|||||||||||||||||||||||||||||||
Sbjct: 235 atctgaagggaaatggaggagggttggatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_j13.g1 MSMg01no365_j13.g1 CHROMAT_FILE:
MSMg01no365_j13.g1 PHD_FILE: MSMg01no365_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:08 2005
(521 letters)
>mm_chr13_117270709_117271629
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%)
Strand = Plus / Plus
Query: 1 cattctgaatgaacaactaaagtttgaattttcttagccttttttgaattgttaactata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctgaatgaacaactaaagtttgaattttcttagccttttttgaattgttaactata 260
Query: 61 gataaggaaatgtagtatctttaaagcagacagaaaatcgtttttaaatgtacccttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaggaaatgtagtatctttaaagcagacagaaaatcgtttttaaatgtacccttaat 320
Query: 121 attgaaaatgtttgtctcatctcttaatgggaatacagtctctggagctgaggaatggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgaaaatgtttgtctcatctcttaatgggaatacagtctctggagctgaggaatggtg 380
Query: 181 tttcattcttaaagcacattataattgggctttagagcactttggtttcctttcttcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattcttaaagcacattataattgggctttagagcactttggtttcctttcttcctc 440
Query: 241 ttccgggaggtcaagctgcaaaagccatttaatccagttatgtgagtttcttccccctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccgggaggtcaagctgcaaaagccatttaatccagttatgtgagtttcttccccctca 500
Query: 301 tcaacagtcgaagcaaattgttggcataaatgacttttcttaacaggcatgctactgacc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tcaacagtcgaagcaaattgttggcataaatgactttacttaacaggcatgctactgacc 560
Query: 361 cttttgccaagaatatgtccatctagagaggctcattatgtggaaattttaatgggtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttgccaagaatatgtccatctagagaggctcattatgtggaaattttaatgggtttt 620
Query: 421 cctataaatcaccaggttctggggaaaacctgcttccaaagcttgctcacctttgcaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 cctataaatcaccaggttctggggaaaacctgcttccaaagcttgctcacctttgcagct 680
Query: 481 ctgcatcctatttagtttaacattgctattggtattattgc 521
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 ctgcatcctatttagtttaacattgctattggcattattgc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
