BAC Information

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BAC

Clone NameMSMg01-365L02
Chromosome13 (Build37)
Map Location 22,188,689 - 22,189,191
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17
Downstream geneV1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365L02.T7 (MSMg01no365_l02.b1)MSMg01-365L02.TJ (MSMg01no365_l02.g1)
ACCAG473587AG473588
length726730
length of high quality
(start - end)		518 (48 - 565)481 (57 - 537)
definitionCHROMAT_FILE: MSMg01no365_l02.b1 PHD_FILE: MSMg01no365_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:15 2005CHROMAT_FILE: MSMg01no365_l02.g1 PHD_FILE: MSMg01no365_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTATTATAGTTATGTATGGCAAACTACATTACTTAATAGAAGA
AAGTCCCCCCCCCCAAATCACTTAGAATAACAGCTGAGTCACTCCCATAT
ACAGGATTTTACAATGGTTTAGGAAGAAGATCAGGCTGTGGTTTAAGGAG
GAACTAGAATATTGCATTATTCATGAGAAGGTTAACTATAGCAGAACTCC
CTAATTACAACTATGGCTTGGGTGTGAAAACCCTTTCCCCTAGAGCATAA
CAACCTCACACCTGGCTTCTAAGAATATAGCTGACCTTAGATAGAGCTGA
ATTTGTCTCAGTTGTTATATTGCCTAGTTCCTGCTAGTCTTTATGTATGC
ATTCCTCTGGTTTGTGTAAAGACTCATTAAGCATTCAATAACCTCAATGT
ACCTTGGCTGATGTGTCACCTAACTTCCTTATTTTCTTCTGTATTATAAA
TCTGATGCTTGCTTTGAGAAATTACATTCAGATCAACACTCCCTTGTGTA
TGTGTCTGTTTGTCACCCCACTGACTCCTTGTCTACCTGAATACTGGGAC
CCTTGATTCTCTGATGCTTGAGGTACCCTCTGAGTCCAGTTCCGAGGTTC
CACACTGCCTTCTTGCTCCCTGAAATATATTACCATTTTCAATGTGCGCG
GTCCGAACCCCTGGTCCACTTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATAAAGCAGGAACCTGGAGCCAGAACTGATATTGAGGCTATGG
AGGGATGCCTTAATTGGCTTGCTCCTCATAGCTGTTCAGCCTGTTTTGTA
TAGAACCCAGGACCATCTCCCCAGGGATGGCACCACCCACAATGGGCTGG
GCCCTCCCCCATCAATCAGTATTTAAGAAAATGCCTTACAGTTGAACTAC
ATGGAGGTATTTTCTCAATTCAGGTCCCCTTCTTTCAGATAACTCTATCT
CATGTCAAGTTGAACTACCCTGCACATGGCCATTGGCTACCATAAAGCAG
TGACTATATGCCCCTTCTACCTGTGGGTGATTGGCTACTAGTCCTTAAGG
ACAAAGGAACCAGAGGTCTTCATGCTGGGTGTGGGTGTGGGTTCGCGTGT
GGGACAGTATTCAGACATGAAGAACGTTCATAGACTACTGCAGTGAGACA
AATCTACTTCACTGCTCCAGGAATAGAGTATATTATGCATTTTTTATGGT
TACAGGCGAAAATGGATAATTGGTCATAACATCTGCTTATCCCGCTGCTG
AGAAGTCTTATTTGGATGTTGTTGCTGTGTTTTTCCCTTTTGTCCATAAA
CTCTCTCCTTTGTTACTTTCTCCTTTAGTCACCAGCCTCACACCAGATTC
TGCGTATCTTCTGTTACCACCTTTGTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_l02.g1 MSMg01no365_l02.g1 CHROMAT_FILE:
MSMg01no365_l02.g1 PHD_FILE: MSMg01no365_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:15 2005
         (481 letters)



>mm_chr13_22188513_22189393
          Length = 881

 Score =  810 bits (419), Expect = 0.0
 Identities = 471/503 (93%), Gaps = 24/503 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaagcaggaacctggagccagaactgatattgaggctatggagggatgccttaattg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aatagagcaggaacctggagccagaactgatattgaggctatggagggatgccttaattg 236

                                                                       
Query: 61  gcttgctcctcatagctgttcagcctgttttgtatagaacccaggaccatctccccaggg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 237 gcttgctcatcatagctgttcagcctgttttgtatagaacccaggaccatctccctaggg 296

                                                                       
Query: 121 atggcaccacccacaatgggctgggccctcccccatcaatcagtatttaagaaaatgcct 180
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 297 atggcaccacctacaatgggctgggccctcccccatcaatcagtatttgagaaaatgcct 356

                                                                       
Query: 181 tacagttgaactacatggaggtattttctcaattcaggtccccttctttcagataactct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 357 tacagttgaactacatggaggtattttctcaattcaggtccccttctttcagatcactct 416

                                                                       
Query: 241 atctcatgtcaagttgaactaccctgcacatggccattggctaccataaagcagtgacta 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atctcatgtcaagttgaactagcctgcacatggccattggctaccataaagcagtgacta 476

                                                                       
Query: 301 tatgccccttctacctgtgggtgattggctactagtccttaaggacaaaggaaccagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tatgccccttctacctgtgggtgattggctactagtccttaaggacaaaggaaccagagg 536

                                                                       
Query: 361 tcttcatgctgggtgtgggtgtgggt-t-----------------------cgcgtgtgg 396
           |||||||||||||||||||||||||| |                       |||||||||
Sbjct: 537 tcttcatgctgggtgtgggtgtgggtgtgggtgtgggtgtgggtgtgggtgcgcgtgtgg 596

                                                                       
Query: 397 gacagtattcagacatgaagaacgttcatagactactgcagtgagacaaatctacttcac 456
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 597 gacagtattcagacatgaagaactttcatagactactgcagtgagacaaatctacttcac 656

                                  
Query: 457 tgctccaggaatagagtatatta 479
           |||||||||||||||||||||||
Sbjct: 657 tgctccaggaatagagtatatta 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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