Query= MSMg01no366_c17.b1 MSMg01no366_c17.b1 CHROMAT_FILE:
MSMg01no366_c17.b1 PHD_FILE: MSMg01no366_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:56 2005
(492 letters)
>mm_chr13_94732390_94733282
Length = 893
Score = 891 bits (461), Expect = 0.0
Identities = 482/489 (98%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtttatttccctgccccattttttaaaattgggttattaattttcttactata 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtttaattccctgccccattttttaaaattgggttattaattttcttactata 265
Query: 65 gaattttttgagttttttgtgtatcctatatactaaccctctgtcgtgtgtacctataga 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaattttt-gagttttttgtgtatcctatatactaaccctctgtcgtgtgtacctataga 324
Query: 125 ctcctcttcactagaataatggtgtccttagacaggattttcaggtgctcacacgaagtt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ctcctcttcactagaataatggtgtccttagacaggattttcaggtgctcacacgaagct 384
Query: 185 gaagatgctctgagaaaaatgcatagaatgcttggatgttgctctctccaaactggtgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagatgctctgagaaaaatgcatagaatgcttggatgttgctctctccaaactggtgct 444
Query: 245 tgtaccatgctgtgaaatgattagtggatgtatccagcaatcttttaaaatgaaataaaa 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tgtaccatgctgtgaaatgattagtggatgtacccagcaatcttttaaaatgaaataaaa 504
Query: 305 ttaaacagaacatctcatagtacagcacacaggatatgagttaacaggtatttttcaaga 364
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 505 ttaaacagaacatctcatagtacagcacacaggatacgagctaacaggtatttttcaaga 564
Query: 365 tgtactttcacctctattgtgtgccatatgtgttcttactgtgggtttaatttttatttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtactttcacctctattgtgtgccatatgtgttcttactgtgggtttaatttttatttc 624
Query: 425 aaagttgaaagcccctattattaatgcaaagacagaactg-ctcagcactgggtcacaag 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 aaagttgaaagcccctattattaatgcaaagacagaactgtctcagcactgggtcacaag 684
Query: 484 cactgtctt 492
|||||||||
Sbjct: 685 cactgtctt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_c17.g1 MSMg01no366_c17.g1 CHROMAT_FILE:
MSMg01no366_c17.g1 PHD_FILE: MSMg01no366_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:56 2005
(469 letters)
>mm_chr13_94901874_94902742
Length = 869
Score = 841 bits (435), Expect = 0.0
Identities = 462/471 (98%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 1 cagggggcggagtggggggagggcggtgcactctacaaatgctacaagaggaagcaggga 60
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct: 669 cagggggcggagtggggggagggcggtacactctacaaatgttacaa-aggaagcaggga 611
Query: 61 ctcccgagaggggaagccctgagcacactgg-tcggggctaggaaatgagcaaggtgtct 119
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 610 ctcccgagaggggaagccctgagtgcactggct-ggggctaggaaatgagcaaggtgtct 552
Query: 120 ccttgttccagagcagcctcttgagagcctttgtgagactggacaaaggcaaaatcttgt 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccttgttccagagcagcctcttaagagcctttgtgagactggacaaaggcaaaatcttgt 492
Query: 180 gtgcagtgttttgtttgttgtggttctcggacagagcc-gggggagtagcgtatgctaag 238
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 491 gtgcagtgttttgtttgttgtggttctcggacagagcctgggggagtagcgtatgctaag 432
Query: 239 caagccctctgccactgggctagatccgcagactttatgggtggtttcaactgtgcagca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caagccctctgccactgggctagatccgcagactttatgggtggtttcaactgtgcagca 372
Query: 299 ggagttccgtcagcccaagtgtgggatgatgggacttgatctaccatcctcagaggatct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggagttccgtcagcccaagtgtgggatgatgggacttgatctaccatcctcagaggatct 312
Query: 359 gaaaagagactgggaggtccaactcctgctcctcatcattctgagcaatggccccacagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaaagagactgggaggtccaactcctgctcctcatcattctgagcaatggccccacagc 252
Query: 419 ctggacaccacacatcgagtttctagccctaggtagttagctattttgtca 469
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctggacaccacacatcgagtttctagccctaggtagttagctattttgtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
