BAC Information

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BAC

Clone NameMSMg01-366F16
Chromosome13 (Build37)
Map Location 38,569,499 - 38,569,747
singlet/doubletsinglet
Overlap geneBmp6
Upstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366F16.T7 (MSMg01no366_f16.b1)MSMg01-366F16.TJ (MSMg01no366_f16.g1)
ACCAG474088AG474089
length825768
length of high quality
(start - end)
249 (74 - 322)404 (80 - 483)
definitionCHROMAT_FILE: MSMg01no366_f16.b1 PHD_FILE: MSMg01no366_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:10 2005CHROMAT_FILE: MSMg01no366_f16.g1 PHD_FILE: MSMg01no366_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGATC
CGCGGAATTCCCAAGTATTCTGAAATGAAAGAGTCAGCACTTACCTCTCA
CCTCAGGGCCCCGCCCTACTCTGGGGTCTTGAATTGACCCCTCATGTGTT
TCCTGGCTTCCCACTCTAAGATGCTTTCAAACAGGTGAGGTTGTCAACGC
ATTCCTTTTGTTGTTTTGTTTGTTTTGGATTGGGAACGGGGAGGAGGGGT
AGTCTGACACTTCATAACCGGAAGTATATACCATGGAGACCAGCATCTTA
CTAGCATTTCAACTTGGAAGTCTTTTTTTGGAGTCCCCCCAAATGTCAAT
ACATATATTATTAACCAAACACAGATCTATAATGAGACCCCACTACAGTA
GCTGGCTCAGTTACAGGACCCACAACAGGCACTTCTTCAGTACAGCATTA
CTCATGGATAGAGGATGCTGCTAGGAAATGCTGTTGCATTTTCAGTAAAG
AATAAAATTCATCTTTTTTAGATGATTAAGACCAATTTCTTCTCCTAATA
AAAAGGCTATATTTTCTAAATCCCCGGATGGCCAATTCCCTTTTTTGTTC
TTTTGAAAAAAAATAAAAGCTCTAAACCTCTGGTCTCCCATTTCATACAC
CAAGGGTATTTTCCCCCTGCTTTTGCCCTTAAACAACTTGTATATGCGTG
CCCTATATCTCACCCCATAAATCCTTTTTTTTCACCACATATCACTCCCC
ACTCTTTCAAACCCCCTTTTTTCCCATTCTCCCCTTGTTTCTCCTTTTCC
TTTTTTNCCCTCCTATAATCTATCG
NTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATTTATACTGTCTAGG
CCCATATCATGCTAAATAAGAAGCACACCTGGGGCTGGTGAGATGGCACA
GTGGTTAAGAGCACCAAATGCTCTTCCAAAGGTCTTGAGTTCAAATCCCA
GCAACCACATGGTGATTCACAACCATCCGTAACAAAATCTGATGCTGTCT
TCTGAAGTGTCTGAAGACAGCTACAGTGTACTTACATTAAATATATATAT
ATATATTTGGGGCTGGAGAGATGGTTTATCGGTTAAGAGCACCAACAAAG
GTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTAA
CAAGATCTGACACCCTCTTCTGGAGTGTCTGAAGATAGCTACAGTGTACT
TACATATAATAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA
AAATAAAATAAAATAAAATAAAATAAAAATAAGCACACCTGCTTACAGAG
CCAGCCTTGCTGGCTTCAAACTTCTGACTCTCCAGTTGAACTCTTATAGC
CATGACCCAAGAATTGATGTTTGTCTTCTTAAAACCGATTACCTGTGTTT
TGCCTTTCCAGTTACTCCATTGAACAAAACTTGATGATAAAGTAAGTAGA
TCTGGCTGTCCTTAAAAAATTCAATGTCATTCCTAAAACCCTGCAACCCC
CTTTTCCATCCTTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_f16.b1 MSMg01no366_f16.b1 CHROMAT_FILE:
MSMg01no366_f16.b1 PHD_FILE: MSMg01no366_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:10 2005
         (249 letters)



>mm_chr13_38569299_38569947
          Length = 649

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaagagtcagcacttacctctcacctcagggccccgccctactctggggtcttgaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaaagagtcagcacttacctctcatctcagggccccgccctactctggggtcttgaa 260

                                                                       
Query: 61  ttgacccctcatgtgtttcctggcttcccactctaagatgctttcaaacaggtgaggttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 261 ttgacccctcatgtgtttcctggcttcccactctaagatgctttcaaacaggtgatattg 320

                                                                       
Query: 121 tcaacgcattccttttgttgttttgtttgttttggattgggaacggggaggaggggtagt 180
           |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||
Sbjct: 321 tcaacgcattccttttgttgttttgtttgtttaggattgggagtggggaggaggggtagt 380

                                                                       
Query: 181 ctgacacttcataaccggaagtatataccatggagaccagcatcttactagcatttcaac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacatttcataaccggaagtatataccatggagaccagcatcttactagcatttcaac 440

                    
Query: 241 ttggaagtc 249
           |||||||||
Sbjct: 441 ttggaagtc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)