Query= MSMg01no366_h20.b1 MSMg01no366_h20.b1 CHROMAT_FILE:
MSMg01no366_h20.b1 PHD_FILE: MSMg01no366_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:21 2005
(486 letters)
>mm_chr13_5526081_5526966
Length = 886
Score = 859 bits (444), Expect = 0.0
Identities = 474/486 (97%), Gaps = 5/486 (1%)
Strand = Plus / Plus
Query: 5 gaattcctacttgtacatccacagctgttcatacagagttgttttccacccccaaggttg 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacttggatatccacagctgttcatacagagttgttttccacccccaaggttg 264
Query: 65 tagtaaaagatggtaatatagttgtgggtcagccaggctctatttaggagagagctgagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtaaaagatggtaatatagttgtgggtcagccaggctctatttaggagagagctgagt 324
Query: 125 gacattgtcattatatagaattttaagccagcagtgtggctcatctggcaagggctcaca 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaattgtcattatatagaattttaagccagcagtgtggctcatctggcaagggctcaca 384
Query: 185 ccttgtattactgtatgctctggctagaatacagacacttcctagtacatacctttaaac 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttgtattacagtatgctctggctagaatacagacacttcctagtacatacctttaaac 444
Query: 245 cctaagaataaaggtaaggttaacttgtagaaggccacatttgaaagtgacatttaattg 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctaagaataaaggtaaggttagcttgtagaaggccacatttgaaagtgacatttaattg 504
Query: 305 aaggacagacaaagtgatgagtcagagaaagatttgacagaacgagtcagacataggata 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggacagacaaagtgataagtcagagaaagatttgacagaacgagtcagacataggata 564
Query: 365 tgcccaaactcacacaagagcagcagagaaagagaaactgtttaagagtagtgagaaaga 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tgcccaaactcacacaagagcagcagagaaagagaaactgtt-aagagtagtgagaaaga 623
Query: 425 a----gcacttctgttgagtggagctcatttgtgtgcagttgagctcagtcccttttgaa 480
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 aagaagcacttctgttgagtggagctcatttgtgtgcagttgagctcagttccttttgaa 683
Query: 481 gcagtt 486
||||||
Sbjct: 684 gcagtt 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_h20.g1 MSMg01no366_h20.g1 CHROMAT_FILE:
MSMg01no366_h20.g1 PHD_FILE: MSMg01no366_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:21 2005
(473 letters)
>mm_chr13_5674520_5675392
Length = 873
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Minus
Query: 1 aatcagcttgacaatgaggccttgcccctgagaggaatcccattcagaaggagctgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aatcagcttgacaatgaggccttgcccctgagaggaatcccattcagaaggagctgagac 614
Query: 61 ctatcctatttccatggcaacattctgctctctacgtaatgggctctgaattggataatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctatcctatttccatggcaacattctgctctctacgtaatgggctctgaattggataatg 554
Query: 121 caccacatcatagagcttcataattcacactttctggttgctcagctcctgtagagcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caccacatcatagagcttcataattcacactttctggttgctcagctcctgtagagcaac 494
Query: 181 ctgattcctgttagctgcattttataagagatcaattaagtcacaaaggaaggggtagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgattcctgttagctgcattttataagagatcaattaagtcacaaaggaaggggtagaa 434
Query: 241 ctaatgtttcaccaaaacctacagcatggtgtctactaatgaatttttctcctttttttt 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 433 ctaatgtttcaccaaaacctacagcatggtggctactaatgaatttttctcctttttttt 374
Query: 301 cccccgagttggtgacaaagctaattttttaatccaaaatttctctgggaaccacaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttcccgagttggtgacaaagctaattttttaatccaaaatttctctgggaaccacaattg 314
Query: 361 atttttgtgttgaataaaattcagaaactctctaaaaacacacaagtcctggagattgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atttttgtgttgaataaaattcagaaactctctaaaaacacacaagtcctggagattgat 254
Query: 421 tatcatctgctgtgacagggtggaaagatagccacctctgtaaaattgtctga 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tatcatctgctgtgacagggtggaaagatagccacctctgtaaaattgtctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
