BAC Information

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BAC

Clone NameMSMg01-366I22
Chromosome13 (Build37)
Map Location 72,642,847 - 72,643,034
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042360, Irx1, LOC100042828, LOC100042832, LOC100042836
Downstream geneIrx2, LOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366I22.T7 (MSMg01no366_i22.b1)MSMg01-366I22.TJ (MSMg01no366_i22.g1)
ACCAG474242AG474243
length856793
length of high quality
(start - end)
202 (56 - 257)373 (78 - 450)
definitionCHROMAT_FILE: MSMg01no366_i22.b1 PHD_FILE: MSMg01no366_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:26 2005CHROMAT_FILE: MSMg01no366_i22.g1 PHD_FILE: MSMg01no366_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACG
CGGAATTCACCTGTAGCTCCTAACAGTATGTACCTTGAGCACTTGGTGGG
GAGTGGGGTACCTCAGGGTTTGCATCAGACCTGCCAAGGTTTCATCTGTG
TGCCTTCCAAACTCTTTACCTACAACAGAGTGTTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTATAATTCTATTAA
AGCTGCCTATTATCTGAGTTCGGAGGTGATTTCTTTTGCATCAAGAATTA
CCTGTTATTCATGCACCCCCCTTTCCTTTTTTTTATTTGCAAAATTCCAG
ATCCTTTGCATACTTATTTTTCTCCTTTCGCTGTTTAAAACAGGGTACAA
TTAGCTATATTAAAAAGTACCCCCCCCCCCACCGTCATCCTGTTTTTTCA
CATTTCTTCTTTATTTTCTTGCTATCTCTCAAACCTTTTCCAATAACCCC
CTGATATAGAATTACTTTAAATTCTTCTTCTCACATTATTATTCAATATT
GTATTTATACCCTTCTCTTATTCTATTCATGACTCTTTCTCTTTTTTATA
TTATAATCTAATTACAATAACTTTATTAACACTTTTTTACAATCTCTCCC
CTTCACCTTTTTATTATAATTCTTTATTTACCTCATCCCCCTTTATATTT
TTCCATATTTATTGTCACACCCACACGTACACTTCCTTTTACCCTCTTCC
TATAAATTGTTATACCATATCCCCTCTATTTTTCATTTACGCACCCCTTT
TTCACTTTCCACTCATCATCACCGTTTATTTCCCTACCATTATATTCTTT
ATATTG
NNNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCA
TCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGG
TGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTG
GTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGC
AATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTC
TGTTGATTTTGTTACCCTCTATCAGCATGCGTGGGAGACAAGCTCTCTTC
TCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTC
AGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGT
GAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGGGTTGCTTTGTCCAGCA
ATGGGCTCAGTTGTCTGGAGCCTAAAATGTCTCATTTTTTTAGCTCTGTG
GTCCTTGCTCCTATGGTTTTCGTTCTTTCGGACTTGAATTTTTTGCCCCC
CCCAATAACTTCGTTATCCTTTCCCCTGTCCTTAAAATGTTTTACCCCTC
TTATCTCCCTTCACTTCCTTTTCTATCTGTCTTTCTCTCGATTATCTCCA
TCTTTTTTTCTTTTCCGTTTTCTTTTTCTTCCCTTTTATTTTTTTCCCGT
GTCCTCTGTGTGTTTTTCTCCCTTTTTCTTCTCCTATCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_i22.b1 MSMg01no366_i22.b1 CHROMAT_FILE:
MSMg01no366_i22.b1 PHD_FILE: MSMg01no366_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:26 2005
         (202 letters)



>mm_chr13_72642653_72643254
          Length = 602

 Score =  329 bits (170), Expect = 8e-95
 Identities = 181/188 (96%), Gaps = 6/188 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacctgta------gctcctaacagtatgtaccttgagcacttggtggggagtggggt 54
           ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttcacctgtagctattgctcctaacagtatgtaccttgagcacttggtggggagtggggt 254

                                                                       
Query: 55  acctcagggtttgcatcagacctgccaaggtttcatctgtgtgccttccaaactctttac 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acctcagggtttgcatcagacctgccaaggtttcatctgtgtgccttccaaactctttac 314

                                                                       
Query: 115 ctacaacagagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgt 174
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 315 ctacaacagagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 374

                   
Query: 175 gtgtgtgt 182
           ||||||||
Sbjct: 375 gtgtgtgt 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)