Query= MSMg01no367_e11.b1 MSMg01no367_e11.b1 CHROMAT_FILE:
MSMg01no367_e11.b1 PHD_FILE: MSMg01no367_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:23 2005
(495 letters)
>mm_chr13_42709848_42710742
Length = 895
Score = 913 bits (472), Expect = 0.0
Identities = 491/500 (98%), Gaps = 5/500 (1%)
Strand = Plus / Plus
Query: 1 tgactgtagttcatactaatacatggagagtcagcaagcactgagagcagacccttaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tgactgtagttcatactaatacatggagagtcagcaagcactgagagcagatccttaagt 260
Query: 61 attatcatatacacatagtatatgataatatactgtaagtatacgaatgaagagtgtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatcatatacacatagtatatgataatatactgtaagtatacgaatgaagagtgtgat 320
Query: 121 tattagcttgactaggaaacattgtcaacatgtataccaaaacagtccctaaccccatcc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattagcttgactaggaaacatggtcaacatgtataccaaaacagtccctaaccccatcc 380
Query: 181 taaacatctgtccatacccccacagttaagtgtagtcttcactcctcatcaaggaaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacatctgtccatacccccacagttaagtgtagtcttcactcctcatcaaggaaactt 440
Query: 241 ctttgcaaccatcagaggccatcacagaaaacctaaccagtagaaatactgaattatgga 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgcaaccatcagagaccatcacagaaaacctaaccagtagaaatactgaattatgga 500
Query: 301 gcacagtcccaatggatacatctacagggcaactcttgcacctaaggcttttggatcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacagtcccaatggatacatctacagggcaactcttgcacctaaggcttttggatcatt 560
Query: 361 gcagaagatggggcagaaagattgtaaatggtaaaggatatga-----gggagtttgctg 415
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 561 gcagaagatggggcagaaagattgtaaatggtagaggatatgatatgagggagtttgctg 620
Query: 416 tgagattgtgtcttctaggaatgtcagaagctacacttatcaagtctcaccaacatgact 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagattgtgtcttctaggaatgtcagaagctacacttatcaagtctcaccaacatgact 680
Query: 476 gcctaaacagaagctgaaga 495
||||||||||||||||||||
Sbjct: 681 gcctaaacagaagctgaaga 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_e11.g1 MSMg01no367_e11.g1 CHROMAT_FILE:
MSMg01no367_e11.g1 PHD_FILE: MSMg01no367_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:23 2005
(541 letters)
>mm_chr13_42872372_42873314
Length = 943
Score = 1000 bits (517), Expect = 0.0
Identities = 536/543 (98%), Gaps = 2/543 (0%)
Strand = Plus / Minus
Query: 1 agcacagtcaagctttggagtttgccttgacatacagccttcctctgattggatgagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agcacagtcaagctttggagtttgccttgacatacagccttcctctgattggatgagaag 684
Query: 61 atgtcccttacgatagtatcagttagtaaactattagccttacttgttcctgaggaattc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atgtccctcacgatagtatcagttagtaaactattagccttacttgttcctgaggaattc 624
Query: 121 tcttgtatgcccaactcaaatggcattgtcaaagaggacccgaagaataaatcaaaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcttgtatgcccaactcaaatggcattgtcaaagaggacccgaagaataaatcaaaaggt 564
Query: 181 acttattatgactttcatcccttcatttctctgtgactttattatgttcagccacctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acttattatgactttcatcccttcatttctctgtgactttattatgttcagccacctcct 504
Query: 241 cataaatagtt--aaaaaaaacaacaataacaacaacagcccctttcttccattagtctt 298
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagaaatagttaaaaaaaaaacaacaataacaacaacagcccctttcttccattagtctt 444
Query: 299 tgacagtgtgtcaattaatctttgttatgctcatttaggtttactctgtacacgctgaag 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 tgacagtgtgtcaattaatctttgttatgatcatttaggtttactctgtacacgctgaag 384
Query: 359 gttctttgacggtgaatttgcagggtaagcctcccaggaagggtctgggaaagggactgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttctttgacggtgaatttgcagggtaagcctcccaggaagggtctgggaaagggactgg 324
Query: 419 tgcatttcttttaatttcctgactggagcttgctctctgcctccccccatccactcacta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcatttcttttaatttcctgactggagcttgctctctgcctccccccatccactcacta 264
Query: 479 gcttcctcccttcttctgaggcttgagaaagtagggaaggataagggacttggggaacaa 538
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 gctttctcccttcttctgaggcttgagaaagtagggaaggaaaagggacttggggaacaa 204
Query: 539 gga 541
|||
Sbjct: 203 gga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space: 495423
Effective search space used: 495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
