BAC Information

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BAC

Clone NameMSMg01-367J18
Chromosome13 (Build37)
Map Location 108,430,250 - 108,631,754
singlet/doubletdoublet
Overlap geneZswim6
Upstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820
Downstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367J18.T7 (MSMg01no367_j18.b1)MSMg01-367J18.TJ (MSMg01no367_j18.g1)
ACCAG475036AG475037
length778814
length of high quality
(start - end)		458 (50 - 507)220 (124 - 343)
definitionCHROMAT_FILE: MSMg01no367_j18.b1 PHD_FILE: MSMg01no367_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:49 2005CHROMAT_FILE: MSMg01no367_j18.g1 PHD_FILE: MSMg01no367_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,631,300 - 108,631,754)(108,430,250 - 108,430,469)
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGAGAGTTACTACCTTTTGACCTTGCCAAATAAATGATTCT
CTCAGAGCCTTGTTTTCTTTGGTAAATAGGAATAGTATTTACTTTGTCAG
CATTGCTTTTGAAGTTCTCAACACAGTGACTGGCTCAGTTAATATGGCGG
TCTTCATGATGAAAGCAGCCATTGTGTGATATCATTTTCTAGAATCTTCT
CTGAGTTAGAAGACAAACTGAATCTGTGAGCTAGTGCCACGGGAGAGCGT
GTTATGCCACAAGGAAAGGTGACTGAGTTTAAGGTTGAGTTGTAGGCTGT
GGTACTGTAAAAACACTCAAAGACTAATGTTTGAAAATAGTTTGAAGATG
GACATTCTGATGCATGCCTGTAATCCCAACACCTGAGGGCAGAGACAGAG
GGACGACCACTGGGAGGTCAACACTAACATGATCCATGTGTGGCCCTGTC
TCAACAACAAGAATGTATTTTGATCGAACACATTGAGTTTCTCTGGTATA
TTGGGTTGAGACATTTACTGTCTCATGCCAGGTTCTTTGTACCCTTGAAA
ATTTGCTTTGTCAGTGGATCCATCTTTTCTTTGACAGGGGTAAACAATAA
AAACTTTCTGTTTTTCTAAACTTCTTTCCTTTACAGAANTGGTTTGTAAT
CTTCCACCCATAACTTCTCCCTTTGTTTCTTTTCTGGTCTGGAAGTCCCC
ATTTTTACTCTTCTTCCCCATTTTTTTN

NTTTTTCTTTTCCTTTTCTTCTTTCTTCCTCTTCCTTTTTTATTTTTTTC
TAAGCTACGCGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTGAAGGCCTAGACCTTTTGGTACA
GAATTTAACATTGCAATACATAGCAACAGACCACCTCAATAGAACAGCAC
TTAAGGAATGGTGGACCTGACAGTAACCAGTAATAGGCTGGTCTGTCCTT
AACCTTACACATTCCCACATCCGAAGTCTCCTAAGTCAGCCCTTTAGGTG
ATGTTCAGTTAGGTTTCTACTGCTGTGATAAAACACCATGATCATAAGCA
ACGTGGCGAGAAAGGTATTTATTTCAGCTTATAGTTCTCCATCACAGTCA
AAGGAAGTCAAGACAGGCACTGGATCTATGCCAGAACCTGTAGATAGGAT
CTGATGCAAGCGTATGCTGCGTACTGGCTTGCTTCTCCATGCTTGCTTAT
CCTGATTTCCTATACCATCCTATACCCCCCTGTCTAGGTATCACTCCACC
TTCATTGGGTAGATCCTTCTTCTCTTTTTGTCTTATTCTGTTATTATCCC
CTTTGTGCTATTTTCGTGTTTTTATTCTTTTTTTTAGAATCTTCTTTCCT
GCCTCTTCGACTTCTATTTCCTTGTCCCCGTTCTAACCATACTTTCCTCC
CTCCTTTTCACCCCTCCTTACATCCTCTTCTTCGGTCTTTCTTTCTCCCT
CCTTTATATTTATACAATTCGTCTTCTTCTTTTCTCCTGCTCAATTTACA
CTTTTTTTACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_j18.b1 MSMg01no367_j18.b1 CHROMAT_FILE:
MSMg01no367_j18.b1 PHD_FILE: MSMg01no367_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:49 2005
         (458 letters)



>mm_chr13_108631093_108631950
          Length = 858

 Score =  857 bits (443), Expect = 0.0
 Identities = 452/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgagagttactaccttttgaccttgccaaataaatgattctctcagagccttg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggaattctgagagttaataccttttgaccttgccaaataaatgattctctcagagccttg 603

                                                                       
Query: 64  ttttctttggtaaataggaatagtatttactttgtcagcattgcttttgaagttctcaac 123
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 602 ttttctttggtaaataggaatagtatttactttgtcagctttgcttttgaagttctcaac 543

                                                                       
Query: 124 acagtgactggctcagttaatatggcggtcttcatgatgaaagcagccattgtgtgatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acagtgactggctcagttaatatggcggtcttcatgatgaaagcagccattgtgtgatat 483

                                                                       
Query: 184 cattttctagaatcttctctgagttagaagacaaactgaatctgtgagctagtgccacgg 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cattttctagaatcttctccgagttagaagacaaactgaatctgtgagctagtgccacgg 423

                                                                       
Query: 244 gagagcgtgttatgccacaaggaaaggtgactgagtttaaggttgagttgtaggctgtgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagagcgtgttatgccacaaggaaaggtgactgagtttaaggttgagttgtaggctgtgg 363

                                                                       
Query: 304 tactgtaaaaacactcaaagactaatgtttgaaaatagtttgaagatggacattctgatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tactgtaaaaacactcaaagactaatgtttgaaaatagtttgaagatggacattctgatg 303

                                                                       
Query: 364 catgcctgtaatcccaacacctgagggcagagacagagggacgaccactgggaggtcaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 catgcctgtaatcccaacacctgagggcagagacagagggacgaccactgggaggtcaac 243

                                              
Query: 424 actaacatgatccatgtgtggccctgtctcaacaa 458
           |||||||||||||||||||||||||||||||||||
Sbjct: 242 actaacatgatccatgtgtggccctgtctcaacaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_j18.g1 MSMg01no367_j18.g1 CHROMAT_FILE:
MSMg01no367_j18.g1 PHD_FILE: MSMg01no367_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:49 2005
         (220 letters)



>mm_chr13_108430050_108430669
          Length = 620

 Score =  402 bits (208), Expect = e-117
 Identities = 217/220 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaaggcctagaccttttggtacagaatttaacattgcaatacatagcaacagacca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 acttgaaggcctagaccttttggtacagaatttaacattgcaatacatagcagcagacca 260

                                                                       
Query: 61  cctcaatagaacagcacttaaggaatggtggacctgacagtaaccagtaataggctggtc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cctcaatagaacagcacttaaggaatggtggacctgacagtaaccagtaataggctggac 320

                                                                       
Query: 121 tgtccttaaccttacacattcccacatccgaagtctcctaagtcagccctttaggtgatg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tgtccttaaccttacacattcccacatctgaagtctcctaagtcagccctttaggtgatg 380

                                                   
Query: 181 ttcagttaggtttctactgctgtgataaaacaccatgatc 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagttaggtttctactgctgtgataaaacaccatgatc 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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