NCCACTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCACCTACTGTATTTATGATCTGTTTAGAATTCTTGA
TTCTTTGACAAGTTCATACCTGTATATACTAAGTTTTGATCATTTTACCC
CCATTATCCTCTCTGATACCAACTCTCTGTTTTTATCTCTCTCCCTGCCT
CTCTCTGGTTCCCATTGACTTTAATAAGGATTTCTTGCATGAGCATGGAG
TGGAAATTATTTACTGTGCATGTACTGCTTATCAGGGTCTATGCTACTCA
TGAAAATGATAACTGATATCCTTTCACAAGTCTCATGCTTTCAATAGTAA
GCAAACTGACCAGATAGAAATGAGGACGGTACCCTGTGGCTTACTTTCAG
ATAGAGTGGATTGATTTCAACTAGGTATTCGACCATGGGGAACTGTGATG
AGTCTGTTAAAATTCTGTGCTGTTCTACTAAGTCCCTGCATCATTGGTCC
TCAACCTTCCTGACGCTGAAACCATTTAATACATTTCCTCATGTTGTGCT
GACCCCAACCATAAGATTAGTTCACGGCTACTTCATAGCTATAATTTTAC
TACTGCCATGAATGATGATGATATGTGACCCCTTTTGGGGTCACAGCCCA
CAGGTTGAAAAACCTTAGAACTGCTGCCCTAAAGGTTTAATCAAAATAAT
TGCTGAAATGCCTCCTTTTGGGGAACAACCTCTTGACTCCTTTAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGATACTTTAGACTAAATTAAAAGTTATGGTTAAATTATGGTC
AAAGTATAAAAAGAGACGTAAAAGTCAAAATATAGGTCACTTCTTACTGT
TATCTTATTTACAATTTCCCAATCCTACATTGTGCTAAAAATCCGAAGAA
AAGGCTCTATTGAAAGTTAAGTAATCTCCTAAAACATATATAATTCATTC
CATAAATGGTATTTTTGTTGGTTGCAGAAAATAGCGTTTTTGCAGGTGAC
TATAAAATATATGACTAAGTGTGGACTGATGATGGCTTCAAAAAGATTCA
GCATGGTAAACTTTTTGGCTATTTGAGACATTTAGCGTATAGAGATTGTG
TGTTTTCTCAAAAATTTGCCCTCAGATTAAATAAATTAGAAGTTTGGATG
CTTGCCAGAGCTGTTAGAAAATTTTGGGTTTTAATCTTGGTTCAAAAACC
TGCCTCTTACAAGCAGGAAAAGAAAGGAAGGGATAAAAGAAAATGGATTT
TAGAATTCTCCCAGGGACAGAGAGAAATCGGGGGACGCCCTGTTTCATTC
TCTCTGGCCCCTACAGGAGAAATTCTTTGTTGTCTAATATTCGGTGCACC
AATCCTGTCAATTCATGGATGTCGTTTGTTTCATTTGCTGAATGATTGTG
TCCTTGGCCGAAAGACTGT

Query= MSMg01no367_k14.b1 MSMg01no367_k14.b1 CHROMAT_FILE:
MSMg01no367_k14.b1 PHD_FILE: MSMg01no367_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:53 2005
         (541 letters)



>mm_chr13_3271118_3272058
          Length = 941

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatttatgatctgtttagaattcttgattctttgacaagttcatacctgtatatactaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 gtatttatgatctgtttagaattcttgattctttgacaagtttatacctgtatatactaa 560

                                                                       
Query: 61  gttttgatcattttacccccattatcctctctgataccaactctctgtttttatctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttttgatcattttacccccattatcctctctgataccaactctctgtttttatctctct 500

                                                                       
Query: 121 ccctgcctctctctggttcccattgactttaataaggatttcttgcatgagcatggagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccctgcctctctctggttcccattgactttaataaggatttcttgcatgagcatggagtg 440

                                                                       
Query: 181 gaaattatttactgtgcatgtactgcttatcagggtctatgctactcatgaaaatgataa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 gaaattatttactgtgcatgtactgcttatcagggtctatgctacttatgaaaatgataa 380

                                                                       
Query: 241 ctgatatcctttcacaagtctcatgctttcaatagtaagcaaactgaccagatagaaatg 300
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgatttcctttcacaagtctaatgctttcaatagtaagcaaactgaccagatagaaatg 320

                                                                       
Query: 301 aggacggtaccctgtggcttactttcagatagagtggattgatttcaactaggtattcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggacggtaccctgtggcttactttcagatagagtggattgatttcaactaggtattcga 260

                                                                       
Query: 361 ccatggggaactgtgatgagtctgttaaaattctgtgctgttctactaagtccctgcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccatggggaactgtgatgagtctgttaaaattctgtgctgttctactaagtccctgcatc 200

                                                                       
Query: 421 attggtcctcaaccttcctgacgctgaaaccatttaatacatttcctcatgttgtgctga 480
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 199 attggtcctcaaccttcctgatgctgaaaccatttaatagatttcctcatgttgtgctga 140

                                                                       
Query: 481 ccccaaccataagattagttcacggctacttcatagctataattttactactgccatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ccccaaccataagattagttcacggctacttcatagctataattttactactgccatgaa 80

            
Query: 541 t 541
           |
Sbjct: 79  t 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)