BAC Information

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BAC

Clone NameMSMg01-368I24
Chromosome13 (Build37)
Map Location 8,049,983 - 8,050,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516, LOC791083
Downstream geneLOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368I24.T7 (MSMg01no368_i24.b1)MSMg01-368I24.TJ (MSMg01no368_i24.g1)
ACCAG475757AG475758
length747747
length of high quality
(start - end)
533 (48 - 580)503 (70 - 572)
definitionCHROMAT_FILE: MSMg01no368_i24.b1 PHD_FILE: MSMg01no368_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005CHROMAT_FILE: MSMg01no368_i24.g1 PHD_FILE: MSMg01no368_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTATCTGTGTACCATTACTTTTTAATAGGGTTATTTGA
TTTTCTGGAGTTCACTTTCTTAAGTTCTTTAAATATATTGGATATTAGTC
CCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTATTGGTGGC
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTGTGCAATTT
TATGAGGTTCCATTTGTCAATTCTCGATCTTACAGAACAAGCCATTGCTG
TTCTAATCAGGAATTTTTCCCCTATGCCCATATCTTTGAGGCGTTTCCCC
ACATTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTGCCTT
CGACCACTAAGATATGAGCTTTGTACAATGACTTAAGAATGGATCAATTC
GCATTCTTCTACATGATAACAGCCAGTTGTGCCAGCAACATTTGTTGAAA
ATGCTGTCATTTTCCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGAGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATT
GGTCTACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTACACTTTGAGGTGAAAGAAGGTGATTCTGTCACAGTTTCT
TTATTGGTGAAAAGATTTTGGTATCCCACCGTTATTGTATTCCCCAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGTGTTCCCGTGAGTCCCATTCCTACTTT
TTTGTATTACTTCACATCCTCTGCATCACATCTGTGGATTAATTAGTCTC
CTGGGCATGAGGAAAACAGAAACAAAGGGAGAGTGAAGGACCAGGCAAGC
CCATGGCTGTGGCCTCTGGAGACCCTGTAAACTGATGCTGCTTGTGACCA
GAGCACCAACTCTAATTCTCATTACTCAAGAGAGGATGAAGGGAGTCTTA
AACTGGTGTTCCCTTAACCTAATACCAGATTTCAGAATTTTATGCCACAG
AGGCAGAGGTTTGGTGCTTCTTTCTTTAACTTTCTACTGCCTGAAGAATA
ATCTAGAAGAAAAGAGAGTGTATTGGTGGCTGGTTAATGCTATGCACTGA
CTCCATGAAATTTTCAGAGCAAAAGTCTCAGCTTGGCTTTTCCCAACAAG
TTCTTTTCAGGAGATAAGCAAATCCACTTACCCTCACAAGTGACTGTAAC
TACAGTATGCCATCTTTAATAGGCTACCAGGCTCTGCTGTTCCTTGGGTT
TTCTTGTCTCTTTAGAGAAGNCTTACTTTGGGTTTTATATATATTACATA
TTCATATATTCATGAAAAATATATTCTTATATAAATTATAAATACGAAGG
GGGGAAAATAAATACTTCCGGGGAAAAACTGTCCCCCCTTTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_i24.g1 MSMg01no368_i24.g1 CHROMAT_FILE:
MSMg01no368_i24.g1 PHD_FILE: MSMg01no368_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:02 2005
         (503 letters)



>mm_chr13_8049783_8050685
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtgttcccgtgagtcccattcctacttttttgtattacttcacatcctctgcatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tatgtgttcccgtgagtcccattcctacttttttgtattacttcacatcctctgcatcac 644

                                                                       
Query: 61  atctgtggattaattagtctcctgggcatgaggaaaacagaaacaaagggagagtgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atctgtggattaattagtctcctgggcatgaggaaaacagaaacaaagggagagtgaagg 584

                                                                       
Query: 121 accaggcaagcccatggctgtggcctctggagaccctgtaaactgatgctgcttgtgacc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 accaggcgagcccatggctgtggcctctggagaccctgtaaactgatgctgcttgtgacc 524

                                                                       
Query: 181 agagcaccaactctaattctcattactcaagagaggatgaagggagtcttaaactggtgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agagcaccaactctagttctcattactcaagagaggatgaagggagtcttaaactggtgt 464

                                                                       
Query: 241 tcccttaacctaataccagatttcagaattttatgccacagaggcagaggtttggtgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcccttaacctaataccagatttcagaattttatgccacagaggcagaggtttggtgctt 404

                                                                       
Query: 301 ctttctttaactttctactgcctgaagaataatctagaagaaaagagagtgtattggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 403 ctttctttaactttctactgcctgaagaataatctagaagaaaagagagtgtattggtgc 344

                                                                       
Query: 361 ctggttaatgctatgcactgactccatgaaattttcagagcaaaagtctcagcttggctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctggttaatgctatgcactgactccatgaaattttcagagcaaaagtctcagcttggctt 284

                                                                       
Query: 421 ttcccaacaagttcttttcaggagataagcaaatccacttaccctcacaagtgactgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttcccaacaagttcttttcaggagataagcaaatccacttaccctcacaagtgactgtaa 224

                                  
Query: 481 ctacagtatgccatctttaatag 503
           |||||||||||||||||||||||
Sbjct: 223 ctacagtatgccatctttaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)