BAC Information

Click to search

BAC

Clone NameMSMg01-369E20
Chromosome13 (Build37)
Map Location 63,423,517 - 63,423,842
singlet/doubletsinglet
Overlap geneFancc
Upstream geneLOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369E20.T7 (MSMg01no369_e20.b1)MSMg01-369E20.TJ (MSMg01no369_e20.g1)
ACCAG476323AG476324
length777642
length of high quality
(start - end)
326 (70 - 395)91 (75 - 165)
definitionCHROMAT_FILE: MSMg01no369_e20.b1 PHD_FILE: MSMg01no369_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:59 2005CHROMAT_FILE: MSMg01no369_e20.g1 PHD_FILE: MSMg01no369_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATTTCAGCTCAGACAAAAAGCTGGTGTTCAAGTGGGGTGGATGA
ATGTCAGGGTCTGTGTAGTCCGTGGGCTTTGGTGTCTACCTGCAGGAAAG
GGTTTGAAGCAGATTAAGACGTTTTTCTGGAAGGGGAGAGGTAAAGGCCA
GATAGATCTGTGCTGTGACCTGGGGCTGGCTGCTCAGTATACTTGCTGAT
GAGGTCTGTGACCCTTCAGCTCTGTTCCGTGGTGGGTTGCCCTCCCTCTG
ACAGAGATTAAGGCTGATGTTGCACCGGTCTTCCCTTTTCCTTCGTTTTC
CTTCTTACTTGATTTAAAACATTTAAATCAAGTGTTCTAGGGGTACAGAA
GGCAATAACCATGCTTAGAACTTGGGGATCCCTATAGTTGATCTGAGGAT
CCTTTACTTCCGTGGTAAAGAACTATTTAAATTGCTAGTTTGATAACCTT
TATGTTGTTTTTTTTCATTAGGTAATTAGCGTCCTCTTGTTTCCCTCCTT
GTTTTTGTTTCTCTTTCTTCCCCGATAATTCCTTTTGATTATGTGTTTCT
TTTTTTTGCTCCTCTTTTTTTATTTGTGGTTCTCTTTTTTTTCTCTCTTC
CTTTCTCCGTTCTTTCCCCCCCTTTTTATCCCCTTCTCCTCTCTTTCTTT
TTTTTTTTACTCCTCAAATTTTTGTCCCCCTCTCTCCTCCTCTCTTCTCT
ATCTCTTTTTTTTTTTTTCTTCTCTCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTACAGCCTTTAAAAGGGCTGAAGT
AGAGCAAGTGTGGCGGAAGTTCTCAGACAGCGTCCGCCAAGGAAACAAGA
GGCCATGTCCACTGGTGGGGTGGGTCCACATGGTACCTTGGAAGCCCGGG
GCCTGGAAAGGATTTCCCAAAAAAGTTTTAACCCCCCCCGTTTTTTTTCC
CTGGGGGAAAGAAGGGGGCGGCTCCCTCTCTTTCTTTCTAAATTTTTTTA
TATTTTTTTTTTTTTTTTATTATACCTCCCTCCNCTTCCNNNCCCCCCCC
TCTTGGGTTTTTTTATCAAAAAAACCCTTTTTCTCCCCCTGGGTTTTTTT
TTTTTTTTTAAATATCTCCCCTCCTAATACCCCCTTTCCTTTCTTTTGTT
TTTTTCTTCTCTGTTGTTTTTGTTTTTTTCCCCTTTTCCCCTCTTTGTTT
TGGTTTTCTTCATTTTTTCAATTTCTATTTTCTTTCTTTATTTATGTTTG
ATTTTTGTTTTTTTCCCTTTTTTTTTTTAACAAATTTCTTCTTTTTTTTT
TTTCCCTTTCCTTTTTTTTCTCCCCTCTCCCTTTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_e20.b1 MSMg01no369_e20.b1 CHROMAT_FILE:
MSMg01no369_e20.b1 PHD_FILE: MSMg01no369_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:59 2005
         (326 letters)



>mm_chr13_63423317_63424042
          Length = 726

 Score =  545 bits (282), Expect = e-159
 Identities = 315/326 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaagctggtgttcaagtggggtggatgaatgtcagggtctgtgtagtccgtgggctt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 526 caaaaagctagtgttcaagtggggtggatgaatgtcagggtctgtgttgtccgtgggcct 467

                                                                       
Query: 61  tggtgtctacctgcaggaaagggtttgaagcagattaagacgtttttctggaaggggaga 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tggggtctacctgcaggaaagggtttgaagcagattaagacgtttttctggaaggggaga 407

                                                                       
Query: 121 ggtaaaggccagatagatctgtgctgtgacctggggctggctgctcagtatacttgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggtaaaggccagatagatctgtgctgtgacctggggctggctgctcagtatacttgctga 347

                                                                       
Query: 181 tgaggtctgtgacccttcagctctgttccgtggtgggttgccctccctctgacagagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgaggtctgtgacccttcagctctgttccgtggtgggttgccctccctctgacagagatt 287

                                                                       
Query: 241 aaggctgatgttgcaccggtcttcccttttccttcgttttccttcttacttgatttaaaa 300
           |||||||| |||||||| |||||||||||||||||||  ||||||  |||||||||||||
Sbjct: 286 aaggctgaggttgcacctgtcttcccttttccttcgtcgtccttcaaacttgatttaaaa 227

                                     
Query: 301 catttaaatcaagtgttctaggggta 326
           ||| ||||||||||||||||||||||
Sbjct: 226 catgtaaatcaagtgttctaggggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)