BAC Information

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BAC

Clone NameMSMg01-369H08
Chromosome13 (Build37)
Map Location 114,282,307 - 114,282,676
singlet/doubletsinglet
Overlap genenone
Upstream geneIl6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888
Downstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369H08.T7 (MSMg01no369_h08.b1)MSMg01-369H08.TJ (MSMg01no369_h08.g1)
ACCAG476440AG476441
length798801
length of high quality
(start - end)
227 (27 - 253)370 (77 - 446)
definitionCHROMAT_FILE: MSMg01no369_h08.b1 PHD_FILE: MSMg01no369_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:11 2005CHROMAT_FILE: MSMg01no369_h08.g1 PHD_FILE: MSMg01no369_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTTAACTG
TTCAGTCTCGAATGGCTGAGAAACGCCTAAAGAATTGTTCAACATCCTTA
GTCATCAGGGAAATGCAAATCAAAGTGACCTGAGATTCCACCTCACACCA
GTCAGAATGGCTAAGATCAAACACTCAGGTGACAGCAGATGCTGTCGAGG
ATGTGGAGGAAGAGGAACACTCCTCCATTGTTGGTGGGATTGTCAGGCCT
GGTATTAAGAGATGATTTTCAAGGGTGACTAGACTAGGGTACAGAATGTA
ATCAGGAATTTTTCTCTGCTTCTTTAAGAGAAATAATCTTTGCTGGGTCT
GTATTGTCCTTGTATGTAGGAATGCTTGTATGTCTTTTACCTCTTTCTTT
ATCTCCCCCTTTCCCTGATCTTCTTTTACTTTCACACATTGGTTGTATTC
TGTTTGGTAATTCTTTACCTAACATGTTGCACTTTCTTTCTTTGTTTTTT
TTTTTTAAATTCCTTGTTCTCCCCTAGCTAATTCTTGTATCGTCTTCATT
TTTAATATTCTTTTTCTTTTTTCTTTTTTATATTTTTTTATTTTTTTTTT
TTCTTCCTCCTTCCTTATGTTTTATTCTCTTTATCCCCCTCTTTTTGCCC
TATTACTTTTCTTTTTCTGTACCTTTTTCTTTCTTTTTTCTTTCCTTTTT
TTTTATTCTTTTTGTTCTTTTTCATATATTTCTTTTCCTCTTTCTTCTTT
TTTGTCCTTTGCTTATTTTTTCCTCTCTCCTTCTATAACTCTTTTCCN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACCTTACTATTCTGCTTATTGC
TGTAGGCCACAGGCTTTTTATTTTAACCAATCGGAAGGTGATAGAGAATA
TTGTCCAGAAAGTACTAAGGCAGGAGATGGTTACCTAAATCTGACCTGCA
GTCAGGTCTGAAACCAACATTTGTATAATACAAGGATAATCTTTATACAA
TGCACAAAAACATTACTCCAACAGTAAGTAGCAATTATATGCTTTAATTT
TTATTGGTCTATATTGCCATTATTTAAATATATGTAATGCATACAACAAT
ACATGTGTTGTACCCATTTCTGTTAGTTTTTGAATTTAGTTATTTCTAAT
TCTTCTGTACACTTTGATCTTACAGCCTTTTCTTTTGCTCCAGCCTGTAT
TGGCAACAACTGCTCATAGCTCCAGGATTCCCACTGGGACTCTGGCATTA
CATGGTTAGAACCATCCAAGTTCTGGACAATAAAATGGAAGACTTATCAC
TCATTGCTAGTCGTTTATAAACTGCCCTAAGATATTCTGTCTATATTTCC
GTGTTTATCATTTGGTCTATTGGTCCAATTGTTTTTTGTAAATGTGAGAA
CATGGATCCTCCTATTCTATTTGTCTGTCCTTATTTTATAACTCTTTTTG
CTTGGGTACTTAATCTTTTTGCCTCTTTTGCCCTCTTTTTATTATATGGT
TTTTTTTTCTTCCTCCGCTTTTTGTTCTCTCACTTTTCTTTTCTAACTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_h08.g1 MSMg01no369_h08.g1 CHROMAT_FILE:
MSMg01no369_h08.g1 PHD_FILE: MSMg01no369_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:11 2005
         (370 letters)



>mm_chr13_114282110_114282879
          Length = 770

 Score =  557 bits (288), Expect = e-163
 Identities = 347/378 (91%), Gaps = 19/378 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccttactattctgcttattgctgtaggccacaggctttttattttaaccaatcggaa 60
           ||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 198 ccaccgtactattctgcgtattgctgtaggtcataggctttttattttaaccaatcggaa 257

                                                                       
Query: 61  ggtgatagagaatattgtccagaaagtactaaggcaggagatggttacctaaatctgacc 120
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||      
Sbjct: 258 ggtgacagagaatattgtccagaaaatactaaggcaggagatggttacctaaat------ 311

                                                                       
Query: 121 tgcagtcaggtct-----------gaaaccaacatttgtataatacaaggataatcttta 169
             |||||||||||           |||||||||||||| |||||||||||||||||||||
Sbjct: 312 --cagtcaggtctctgctggttcagaaaccaacatttgaataatacaaggataatcttta 369

                                                                       
Query: 170 tacaatgcacaaaaacattactccaacagtaagtagcaattatatgctttaatttttatt 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tacaatgcacaaaaacattactccaacagtaagtagcaattatatgctttaatttttatt 429

                                                                       
Query: 230 ggtctatattgccattatttaaatatatgtaatgcatacaacaatacatgtgttgtaccc 289
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 430 ggtctatattgccattacataaatatatgtaatgcatacaacaatacatgtgttgtactc 489

                                                                       
Query: 290 atttctgttagtttttgaatttagttatttctaattcttctgtacactttgatcttacag 349
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atttctgctagttttcgaatttagttatttctaattcttctgtacactttgatcttacag 549

                             
Query: 350 ccttttcttttgctccag 367
           ||||||||||||||||||
Sbjct: 550 ccttttcttttgctccag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)