BAC Information

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BAC

Clone NameMSMg01-369H23
Chromosome13 (Build37)
Map Location 116,482,354 - 116,482,718
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369H23.T7 (MSMg01no369_h23.b1)MSMg01-369H23.TJ (MSMg01no369_h23.g1)
ACCAG476469AG476470
length891769
length of high quality
(start - end)
---365 (72 - 436)
definitionCHROMAT_FILE: MSMg01no369_h23.b1 PHD_FILE: MSMg01no369_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:14 2005CHROMAT_FILE: MSMg01no369_h23.g1 PHD_FILE: MSMg01no369_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGATCCACTATAGTGGAGAGGATCCGCGGAATTCTTACTACTATGTGGG
AGTCTCAACAAAATAGTTGAAAGTTCTGAACGACAGGAACCAGTCAATGT
TAGCATAAGGACTGCCGGTATTAGATCTTCACCACTGTCGTTTTGCAGAT
ATACTCTCTTAGTAGAATTACCCCTGTAAGTTTCGTTCGCCCAGCTGATG
CCATTTAATTATCCACATCCAAATTACATCGCGCCTTGTCCCCTTCCATT
GCGTTTCCATACCGCTCTCAATCTTCACATGCACTACCTTCCTCTTTCCC
ATATCTTCCCTCCGACACCCTATGTTTTGTTTTCTCCCGTCTCCCCTTCC
CCCCCTTCTTCCCTTATTCTTTTTCCATTCTCTCTTCTTTCCTCTCCCCC
CCCTTTTCCCCCGCTTTTCTTCACCTTTTTCCCTTCCCTATTCCCCCCCT
CTTTTTCCCCCTTCCCTTTCCCCCCCTTTTTTCCCTCCTCCCCTTCTTCT
CCTCCTCTCTCCCGCCTTCCCTCTTTCTCTTTTCCCCCTTACACTTGTTC
TTTCTTTTTTTGTCTTTCCCCTCTTCCCCCTCTCTCCGCCATCTTCTCTC
TCCCTCCCATTTCTCACTCCCCTATAGCTTTCCCTTCTCCCTTCCATCCT
TTCTCCCTCCTTCCCCTTCTTTTCCTCTCTTTCTCCGCCTCTCGTTTTTC
CTTTCTCTCTTCTCTCCCTTCCACTTCCCCCTATTTGCTTATACTTCTCT
TTTCTTTCCCCTCCCTCTTTTCCTCCCTCCCCCTTACTTTTTTTACACCC
CTCTATCTCTTCTCTTTCTCCCTCGTTCTTTCCCTTCTCTTTTCTCTTTC
CCCTTCTCTCCCCCCCTTCTTCTCCCTCTCCTTTTCACTCC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGCGCATGGAGCTGCTTTAATTTTTGA
CTCCACAACATGAATTCCCTCTGACCACATCAGCTCAGCCATGAGACAAG
ATTATGTTTCATCTTTCAGCTTGGCAGCTATGCATTGTGGGTAGTTATGT
TTTACCTTTTTCGGGTTTTCCTCCTTTCAATCTAAATAAACTATCAAGAG
CAATCTAATTTGACCCATGAATAGAAACAAATACTTAACGTTGTGATCTG
CCTTCAAAAGTGTCCATCCTATTTCTGTGTCTCTATGTATGCATGCAAAT
CCAAGATTGAGACCCCAGATGTGAACAGATGATATGCTTGGCCCTGTTCT
ATACGGATTTGTCTTATTCTCTCTATTCCTAAATTGTCTTTGTATCACCC
CATTCATTATCTAAAGTACACAGGCTTTTTTTCCTTTTAATTCACCATAT
AATTCACATAACCCCAAATTTGCCCCCTTTTAAGAAACATAAGTTTACAA
CCTTATTGAAAATAAGGGCCCCCTTTTACATAAGGGAAATTTTAATGGAT
AAATGGGGCCGGGAGGTTTTTTTTGCTCAACCCCTTATCAATTTACTTTC
CGAAGAAATTCCCCCCCCCCCAAAAAGGAGGGGGGGGTTTTTTTCTTCTT
CTGGGGTAAAAAAAAAAAGGCCCCCCTCTATAACTGGTTTTCCCCTCCAA
ACCGTTTTATAAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_h23.g1 MSMg01no369_h23.g1 CHROMAT_FILE:
MSMg01no369_h23.g1 PHD_FILE: MSMg01no369_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:14 2005
         (365 letters)



>mm_chr13_116482154_116482918
          Length = 765

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcgcatggagctgctttaatttttgactccacaacatgaattccctctgaccacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcgcatggagctgctttaatttttgactccacaacatgaattccctctgaccacatc 260

                                                                       
Query: 61  agctcagccatgagacaagattatgtttcatctttcagcttggcagctatgcattgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctcagccatgagacaagattatgtttcatctttcagcttggcagctatgcattgtggg 320

                                                                       
Query: 121 tagttatgttttacctttttcgggttttcctcctttcaatctaaataaactatcaagagc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttatgttttaccttttttgggttttcctcctttcaatctaaataaactatcaagagc 380

                                                                       
Query: 181 aatctaatttgacccatgaatagaaacaaatacttaacgttgtgatctgccttcaaaagt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aatctaatttgacccatgaatagaaacaaatacttaactttgtgatctgccttcaaaagt 440

                                                                       
Query: 241 gtccatcctatttctgtgtctctatgtatgcatgcaaatccaagattgagaccccagatg 300
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtccgtcctatttctgtgtctctatgtatgcatgcaaatccaaggttgagaccccagatg 500

                                                                       
Query: 301 tgaacagatgatatgcttggccctgttctatacggatttgtcttattctctctattccta 360
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 501 tgaacagatgatatgcttggccctgttctatacgaatttgtcttattctttctattccta 560

                
Query: 361 aattg 365
           |||||
Sbjct: 561 aattg 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)