Query= MSMg01no369_m18.b1 MSMg01no369_m18.b1 CHROMAT_FILE:
MSMg01no369_m18.b1 PHD_FILE: MSMg01no369_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:37 2005
(257 letters)
>mm_chr13_117565945_117566601
Length = 657
Score = 476 bits (246), Expect = e-139
Identities = 252/254 (99%)
Strand = Plus / Minus
Query: 4 ggaattctctatctgacactgtcaataatctcaggaaaacttttaaggatggttacaaac 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaattctctagctgacactgtcaataatctcaggaaaacttttaaggatggttacaaac 302
Query: 64 tccatcagtagaaatgatatgcctttccttctaatggatcagtaaaaaacaagcaagcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccatcagtagaaatgatatgcctttccttctaatggatcagtaaaaaacaagcaagcaa 242
Query: 124 catcgaaaggatgtgagtttggctattccttagagatgttaataggggcagatcttacta 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catagaaaggatgtgagtttggctattccttagagatgttaataggggcagatcttacta 182
Query: 184 ccttaaaaatattatcgcctcagtataggggaacgccagggccaagaagtgagagtgggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccttaaaaatattatcgcctcagtataggggaacgccagggccaagaagtgagagtgggt 122
Query: 244 gggtaggggagtgg 257
||||||||||||||
Sbjct: 121 gggtaggggagtgg 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_m18.g1 MSMg01no369_m18.g1 CHROMAT_FILE:
MSMg01no369_m18.g1 PHD_FILE: MSMg01no369_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:37 2005
(280 letters)
>mm_chr13_117345252_117345925
Length = 674
Score = 514 bits (266), Expect = e-150
Identities = 274/280 (97%), Gaps = 6/280 (2%)
Strand = Plus / Plus
Query: 1 tagagaagactttgaaaactgccccatttaacctcaagaggacctttctcgtgtatgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagaagactttgaaaactgccccatttaacctcaagaggacctttctcgtgtatgcac 260
Query: 61 aagctactgtgttgctgcccctgttggtacaaagaaaacccatatcagtaacatttacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctactgtgttgctgcccctgttggtacaaagaaaacccatatcagtaacatttacta 320
Query: 121 gcttgttttcatcgtgtatgacaggtcatcagaaaagggttggtgtctcattacatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgttttcatcgtgtatgacaggtcatcagaaaagggttggtgtctcattacatacaa 380
Query: 181 agccacttattaaagtttgagggaaagaaacataatagaaatgaaagcccagtattaata 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agccacttattaaagtttgagggaaagaaacataatagaaatgaa------gtattaata 434
Query: 241 aataagacaaccatctccgaagatgaaaaatgattaggga 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aataagacaaccatctccgaagatgaaaaatgattaggga 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 674
Length adjustment: 9
Effective length of query: 271
Effective length of database: 665
Effective search space: 180215
Effective search space used: 180215
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
