BAC Information

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BAC

Clone NameMSMg01-370C18
Chromosome13 (Build37)
Map Location 35,655,002 - 35,860,924
singlet/doubletdoublet
Overlap geneCdyl
Upstream gene1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneRpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758, Nrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C18.T7 (MSMg01no370_c18.b1)MSMg01-370C18.TJ (MSMg01no370_c18.g1)
ACCAG476982AG476983
length804777
length of high quality
(start - end)		428 (37 - 464)445 (71 - 515)
definitionCHROMAT_FILE: MSMg01no370_c18.b1 PHD_FILE: MSMg01no370_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005CHROMAT_FILE: MSMg01no370_c18.g1 PHD_FILE: MSMg01no370_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,655,002 - 35,655,336)(35,860,480 - 35,860,924)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCA
GACAGCTGCTGGGGACTTTTATTACAGATGGATCTTAATACTCATAAGTT
AATTTTGAGTATTTACTTATTCATGTTTTATAATTTCCTTGCTATAGTTT
TTCAACCAGATAGACAAGTGTGACTACCTAATTTGTTGACATTTTGAACA
CATAGTTGCTCTTTTCTTACTATGATTTAAGAAATCATTTATAGACTATG
AGGTGATGTTGCCTCTTTCATTCCTGATACTAAGGAGTTTTCTTCTTGAT
CAGTTTAGTTATATTCAAGTTGATTTTGTTTTCTCATTTTTTTATTGTTT
TATGTTTTGTTTTGTTTTCCATTGTCTCTTCCTTTTAAGAAAGAAACTGG
CAGTAGTAGTTCACATTTTGTCTCTGCAGTGAATAGTATTAGTCATATAT
GTATGTATCATTCACATGAGCTCCAACAAACACCGAGAACCTAGTGACAG
TGGCTCCTGCCTGTAATTCCAGTATAAAGGAGGCTGAGGAAGGAAAATTG
CTTTTGTTGGAAACTTGGACCACCTTGGGGAAATTGGTTCAACCCCTTCC
TCCCAAAATAAATAAAACCCTCCTAAAAGTTTTTTCTTACCCTCCAAAAC
GAGGAATGGTAGGGGTATTTCTTTCTTTCTCCCTTCTTTTCCTTACTCTT
TCTTTTTCCCTCTTTTTCGTCATCCATTCTTTCCTTTTATCTTTCATTGC
GTATTCTCTATCCCACATTCTGTCACTCACTCACCCTTTCCTCATTCTTT
TTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGGGCATCTGGTACTTGTACTCACATTC
ACCTTGCCTCCCCCATTACCTCCCTGTAACATACGTATAACTACAAACAC
AAATAAATGTAAATGGTACAGATTCTGATCAAAAGAAACAGATCGAACCT
TTTAAAAGGCAAAACACCACCAAAAAAATAATAAAAATAAAAACGCAAAA
ACCCTCTATAATCTATTTTCTAAAGAGGTACTTTAAATACAAATATGAAG
CAAACTAAAAATACCCAGATGGAGAAAGGAACATCAAAGCTAGAACAGCT
ACTGCAAAATGAAGTCAACTTCAAAGTTGGTCGGCTGGTTGGTTTTTCGA
GATAGGGTTTCTCTGTGTAAACAGTCCTGACTGTCCTGGAACTCTTTCTG
GAACAAGCTGGCCTTGAACGCAAGAGTTTTTCCTGCCTCTGCCTCCCGAG
TGCTGGGATTAAGGGCATGCACCACCACACTCAAGTAGCTCTAAAGGGTG
TTACTAGAGTCTACAATGATTTTTAAAGCATTCTAGTCCTGACATATGAA
TGTTAAAATACCTATCCTTTTATGACGCCTTCAAGATCGCCAAACGAAAC
AAAAGGGAAGCTAAGGTGGAAATCTAAACTGTTCAAAAGTGAAAAAGGGT
CAAAAAAAATCGCCGGGTTTTCACTCTTTTAACTTCNNAAACTTTTGCCC
TTCTCTCCAACTCTCTCAACAATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c18.b1 MSMg01no370_c18.b1 CHROMAT_FILE:
MSMg01no370_c18.b1 PHD_FILE: MSMg01no370_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:07 2005
         (428 letters)



>mm_chr13_35654798_35655625
          Length = 828

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccagacagctgctggggacttttattacagatggatcttaatactcataagtt 64
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagacagctgccagggacttttattacagatggatcttaatactcataagtt 264

                                                                       
Query: 65  aattttgagtatttacttattcatgttttataatttccttgctatagtttttcaaccaga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 265 aattttgagtatttacttattcatgttttataatttccttgctatagtttttcaatgaga 324

                                                                       
Query: 125 tagacaagtgtgactacctaatttgttgacattttgaacacatagttgctcttttcttac 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 tagacaagtgtgactacctaatttgttgacattttggacacatagttgctcttttcttac 384

                                                                       
Query: 185 tatgatttaagaaatcatttatagactatgaggtgatgttgcctctttcattcctgatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgatttaagaaatcatttatagactatgaggtgatgttgcctctttcattcctgatac 444

                                                                       
Query: 245 taaggagttttcttcttgatcagtttagttatattcaagttgattttgttttctcatttt 304
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 445 taaggagttttcttcttgatcagtttagttattttcaagttgattttgttttctcagttt 504

                                              
Query: 305 tttattgttttatgttttgttttgttttccattgt 339
           |||||||||||||||||||||||||||||||||||
Sbjct: 505 tttattgttttatgttttgttttgttttccattgt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_c18.g1 MSMg01no370_c18.g1 CHROMAT_FILE:
MSMg01no370_c18.g1 PHD_FILE: MSMg01no370_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:08 2005
         (445 letters)



>mm_chr13_35860234_35861078
          Length = 845

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagggcatctggtacttgtactcacattcaccttgcctcccccattacctccctgtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caagggcatctggtacttgtactcacattcaccttgcctcccccattacctccctgtaac 632

                                                                       
Query: 61  atacgtataactacaaacacaaataaatgtaaatggtacagattctgatcaaaagaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atacgtataactacaaacacaaataaatgtaaatggtacagattctgatcaaaagaaaca 572

                                                                       
Query: 121 gatcgaaccttttaaaaggcaaaacaccaccaaaaaaataataaaaataaaaacgcaaaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 571 gatcgaaccttttaaaaggcaaaacaccatcaaaaaaataataaaaataaaaacgcaaaa 512

                                                                       
Query: 181 accctctataatctattttctaaagaggtactttaaatacaaatatgaagcaaactaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 accctctataatctattttctaaagaggtactttaaatacaaatatgaagcaaactaaaa 452

                                                                       
Query: 241 atacccagatggagaaaggaacatcaaagctagaacagctactgcaaaatgaagtcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atacccagatggagaaaggaacatcaaagctagaacagctactgcaaaatgaagtcaact 392

                                                                       
Query: 301 tcaaagttggtcggctggttggtttttcgagatagggtttctctgtgtaaacagtcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcaaagttggtcggctggttggtttttcgagatagggtttctctgtgtaaacagtcctga 332

                                                                       
Query: 361 ctgtcctggaactctttctggaacaagctggccttgaacgcaagagtttttcctgcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctgtcctggaactctttctggaacaagctggccttgaacgcaagagtttttcctgcctct 272

                                    
Query: 421 gcctcccgagtgctgggattaaggg 445
           |||||||||||||||||||||||||
Sbjct: 271 gcctcccgagtgctgggattaaggg 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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