BAC Information

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BAC

Clone NameMSMg01-370J11
Chromosome13 (Build37)
Map Location 44,040,760 - 44,090,010
singlet/doubletdoublet
Overlap geneLOC100039432
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
Downstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J11.T7 (MSMg01no370_j11.b1)MSMg01-370J11.TJ (MSMg01no370_j11.g1)
ACCAG477302AG477303
length780761
length of high quality
(start - end)		372 (44 - 415)340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no370_j11.b1 PHD_FILE: MSMg01no370_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005CHROMAT_FILE: MSMg01no370_j11.g1 PHD_FILE: MSMg01no370_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,040,760 - 44,041,127)(44,089,671 - 44,090,010)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTTGAGGGAGGGTGAAATAAATTGTCAAGTTCCCCAGTGAATGATTTCAT
AAGTCACCTTTACTGCTACAGCTGAGTTCTGATTGCGTGAAGCAGCAAGT
GCAGTCATGGGGATAACTCCAGTGGAACAGGATCAAAGTTTGCTAATATA
GTATAAAAAAGCAACTTATAAAGGTCAGGAATGATTAATGCTGGGTGTTC
GTGTATGTCAGAACAACAACAAAATCAGCGAGATGAGAAGGGAATCGAGG
AGCCGTGTTTAGAACACGGGACTGGCTCTTCCAAGATACCTGAGTATCAA
ACACTAACTCAGAAACTGACCCATGGTGGACAGATTTTTTATTTCTCCCA
ATACAGGAATTTTAAAATGCTATTAAACCTTATTTTGCGCACCTCTAAAG
GGTATATTTTCTTTATCTCCCTTTCCAAAGTCTGATCACGGGATTTTTAT
GAACCCGTTTTTTTGCCTTTTCTGCCCTTACTTTGTCCTTTTTCCTCTTT
TTCCACTTTTTTTCTCTTTTCCTTCCTTTTTCCATCACCCCTCTTTTCCT
TTCTTTTTCTTTTTTCTTCCTCTATTCATTTATATTCTCCTTTTTTCCCC
TCCCTCCTTTTTCCCCTCATCTCTCCCTTTTCTATTATCTTCATTCCCTC
TTCCCTCTTTTTCCCTCCTTTTTTCCCTCCCTATCTTTCCATCTTTTCTC
ACTCTTCCCTTTTTCCCTTTCCCTCTTCCG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCCAAAGAACTCATCTCTCAGTTTGC
CCTCCCACCTCCCGTCACATCTGATGTCTCCTTTTTAAATGTTCATTTTC
TAATTAAGCATCATCTATGACAGATGGTGTTGTGGGCTAATTAACAGGCA
TGTTGGGAGTGCCCCACAGCACCTGGAGGGCATGTTCATCAGGAGGGCTT
CCAGCTTCTGTGGAAATCGGTCACTCAAGAAAGATCCCAAAGTGGAACAA
AAGGGATACGTGCTACAATGGAGACCTGGGCAAGACAAAAGAGAAAAGAA
AGGTAGAGAGACAGAGAGTCAGAGAAAGACTTAGAACCAATGGTTCACAT
AGTGGGGCTGTTTCTCTGCTGTAAAACTCTCATGTTGCGTCTGTGACCCA
AGCCATCCTTTGGTTTAGTGCACTTATATTGCATGTGTTTCCGCCCCTTT
CAAATTCGTTGTTGCTTTTCTCCATTTTTTATTATCCCCCCCCCCTACCT
TTTTTCTTTTCCTCTCTTTTTCACTTTTTCTTTTTGTCTTTTCTCCTTTC
CCCCCGTTCCTCTCTTTTGCTCTCTATGACCTTTTCCCGCTATTATTCTT
ATTCCCCTCCCACCTATCCACTTATCTATATCTTCTTTTCCCCCTTTTCT
TTTTCTCCACGCCTTTTTGTTCTTCCTCTCCCTTATATCTCCCTTCCACT
TTTCCTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j11.b1 MSMg01no370_j11.b1 CHROMAT_FILE:
MSMg01no370_j11.b1 PHD_FILE: MSMg01no370_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:42 2005
         (372 letters)



>mm_chr13_44040556_44041327
          Length = 772

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaatttgagggagggtgaaataaattgtcaagttccccagtgaatgatttcataagtcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaatttgagggagggtgaaataaattgtcaagttccccagtgaatgatttcataagtcat 264

                                                                       
Query: 65  ctttactgctacagctgagttctgattgcgtgaagcagcaagtgcagtcatggggataac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttactgctacagctgagttctgattgcgtgaagcagcaagtgcagtcatggggataac 324

                                                                       
Query: 125 tccagtggaacaggatcaaagtttgctaatatagtataaaaaagcaacttataaaggtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagtggaacaggatcaaagtttgctaatatagtataaaaaagcaacttataaaggtca 384

                                                                       
Query: 185 ggaatgattaatgctgggtgttcgtgtatgtcagaacaacaacaaaatcagcgagatgag 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaatgattaacgctgggtgttcgtgtatgtcagaacaacaacaaaatcagcgagatgag 444

                                                                       
Query: 245 aagggaatcgaggagccgtgtttagaacacgggactggctcttccaagatacctgagtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagggaatcgaggagccgtgtttagaacacgggactggctcttccaagatacctgagtat 504

                                                                       
Query: 305 caaacactaactcagaaactgacccatggtggacagattttttatttctcccaatacagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaacactaactcagaaactgacccatggtggacagattttttatttctcccaatacagg 564

                   
Query: 365 aattttaa 372
           ||||||||
Sbjct: 565 aattttaa 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_j11.g1 MSMg01no370_j11.g1 CHROMAT_FILE:
MSMg01no370_j11.g1 PHD_FILE: MSMg01no370_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:42 2005
         (340 letters)



>mm_chr13_44089471_44090210
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccaaagaactcatctctcagtttgccctcccacctcccgtcacatctgatgtctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atccaaagaactcatctctcagtttgccctcccacctcccgtcacatctgatgtctcctt 481

                                                                       
Query: 61  tttaaatgttcattttctaattaagcatcatctatgacagatggtgttgtgggctaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttaaatgttcattttctaattaagcatcatctatgacagatggtgttgtgggctaatta 421

                                                                       
Query: 121 acaggcatgttgggagtgccccacagcacctggagggcatgttcatcaggagggcttcca 180
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 420 acaggcatgttgggagtgccctacagcacctggagggcatgttcatcaagagggcttcca 361

                                                                       
Query: 181 gcttctgtggaaatcggtcactcaagaaagatcccaaagtggaacaaaagggatacgtgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 gcttctgtggaaatcggtcactcaagaaagatcccaaagtggaacaaaagggatacatgc 301

                                                                       
Query: 241 tacaatggagacctgggcaagacaaaagagaaaagaaaggtagagagacagagagtcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacaatggagacctgggcaagacaaaagagaaaagaaaggtagagagacagagagtcaga 241

                                                   
Query: 301 gaaagacttagaaccaatggttcacatagtggggctgttt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaaagacttagaaccaatggttcacatagtggggctgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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