BAC Information

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BAC

Clone NameMSMg01-371B07
Chromosome13 (Build37)
Map Location 17,511,063 - 17,698,401
singlet/doubletdoublet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371B07.T7 (MSMg01no371_b07.b1)MSMg01-371B07.TJ (MSMg01no371_b07.g1)
ACCAG477675AG477676
length779773
length of high quality
(start - end)		488 (74 - 561)562 (42 - 603)
definitionCHROMAT_FILE: MSMg01no371_b07.b1 PHD_FILE: MSMg01no371_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:21 2005CHROMAT_FILE: MSMg01no371_b07.g1 PHD_FILE: MSMg01no371_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(17,697,914 - 17,698,401)(17,511,063 - 17,511,621)
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCTGATACTCTGGTATCCTTTCTGA
CTGTAGTAATATCCCCTGGCATTGTAGAAATTTATTTGTGTCTGGCTACA
AAGTCAGCATTCATTTGAAATAAATCTGGCACTGTGAGTTTAACTTGACT
TTATCAGGAGTAAATCTGGTATTGGGTCACGATTTTGTAATCAGTCTGTT
ACTGCATAATCTTAGGCCATCAAATATTAGGCTGAGGGAGTGGCCCTGAG
TGATGGCAGAGGAAACATGGCTTAATTCAAGCTGCATGTGGAGAGAAAAA
CTTCTGAGCTTCTCATCACTTCATTGCCCTCTCAGCTTAGGGCTAAGTGG
AAGCTGCTCTAAGTGTCATTTTCACAAAGCAAGTCAGAATTGCTTTTTCT
TGGCACCATGTTGCAAGTGCATATAAGTATTCATTTAGAAGAAACAGTGC
AATTCTCCTCTTAGTTGTTCATTGCAGTGTAGTAACTTACACATTACTTA
TTTTTGGAGTTCTCATAGAGGAACTTTGAGCCTGAGCTCAATCTCCCAAT
ACAAACTATTCTCACATCACTTGACTTTAACCCAGAAGACTGTTTAAGGT
TAATGGAGATCCTTCTTAAGGGCTCCCTTATTTGAACCCCTGGAAAGGGG
CCTGAAATAAAACCCCATTTCTCTAAATGGGTGGTACCGAAACCAATCTT
TTATTTCAAAGCCTTACAGTCCTCGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATATAAGAAGTCAAAGTATCACTATCCACAGATATGATAGTATATCC
TGAAAATTCTACCAAAGAACTCCTTTAGCTGTTAAACACCTTCAGCAAAT
TGACTGGATACAAAATTAACTCAAAGAAATCACCAGCCCTCCTTTATGCA
AACAATCAATAAGCTGAGAAAGAAGTTAGGGGATAACAGTAGGGGATGAA
GATGATACCTAGAGGAAGGCTGTACCTTATCAAAGGAGAAGGGGAGAGAG
GAAGCAAAGGAGGTTCCGAATGAGGAGGTACAAGAAGGAGAGGTAGAGCT
GATAATGGGATGTAAAGTGAGTAAATAAATAAACATTCTATTTCCTTTAA
GAGTCATGCTCATTGATGAGAATCCTGGGTTCATTTTCAATTAATTCTCA
TTATATGTGCTTTAATTATTTATTTAACAAGTCTTCCTTGCCTGATTACA
AGACCCATTAGAACAAGGACAATGTCTATCTTCACATATTGCTTAATCTC
AGCACTGAGTCCAAATGCTAACACCTATAACATTGTTGCAAGTATAACTG
GTAGACCCAGCAGACTTGTGAGTGTTCACATTCCAAGTCCCTTAGCTAAT
ATCCTGCGCTTCATGTTTTAGNCAAAGTCCTAGCTGATCTCCTCACAACG
GTTTAATTACTCACCTTTGAAATTCCCTAGGAAAAAGCACAGGGAGGGCC
TTTAATGCTACCGAGGTTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_b07.b1 MSMg01no371_b07.b1 CHROMAT_FILE:
MSMg01no371_b07.b1 PHD_FILE: MSMg01no371_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:21 2005
         (488 letters)



>mm_chr13_17697714_17698601
          Length = 888

 Score =  928 bits (480), Expect = 0.0
 Identities = 486/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctgatactctggtatcctttctgactgtagtaatatcccctggcattgtagaaattt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 688 ctcctgatactctggtatcctttctgactgtaataatatcccctggcattgtagaaattt 629

                                                                       
Query: 61  atttgtgtctggctacaaagtcagcattcatttgaaataaatctggcactgtgagtttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttgtgtctggctacaaagtcagcattcatttgaaataaatctggcactgtgagtttaa 569

                                                                       
Query: 121 cttgactttatcaggagtaaatctggtattgggtcacgattttgtaatcagtctgttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttgactttatcaggagtaaatctggtattgggtcacgattttgtaatcagtctgttact 509

                                                                       
Query: 181 gcataatcttaggccatcaaatattaggctgagggagtggccctgagtgatggcagagga 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcatagtcttaggccatcaaatattaggctgagggagtggccctgagtgatggcagagga 449

                                                                       
Query: 241 aacatggcttaattcaagctgcatgtggagagaaaaacttctgagcttctcatcacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacatggcttaattcaagctgcatgtggagagaaaaacttctgagcttctcatcacttca 389

                                                                       
Query: 301 ttgccctctcagcttagggctaagtggaagctgctctaagtgtcattttcacaaagcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgccctctcagcttagggctaagtggaagctgctctaagtgtcattttcacaaagcaag 329

                                                                       
Query: 361 tcagaattgctttttcttggcaccatgttgcaagtgcatataagtattcatttagaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcagaattgctttttcttggcaccatgttgcaagtgcatataagtattcatttagaagaa 269

                                                                       
Query: 421 acagtgcaattctcctcttagttgttcattgcagtgtagtaacttacacattacttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagtgcaattctcctcttagttgttcattgcagtgtagtaacttacacattacttattt 209

                   
Query: 481 ttggagtt 488
           ||||||||
Sbjct: 208 ttggagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_b07.g1 MSMg01no371_b07.g1 CHROMAT_FILE:
MSMg01no371_b07.g1 PHD_FILE: MSMg01no371_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:21 2005
         (562 letters)



>mm_chr13_17510860_17511821
          Length = 962

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaatataagaagtcaaagtatcactatccacagatatgatagtatatcctgaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatataagaagtcaaagtatcactatccacagatatgatagtatatcctgaa 263

                                                                       
Query: 64  aattctaccaaagaactcctttagctgttaaacaccttcagcaaattgactggatacaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattctaccaaagaactcctttagctgttaaacaccttcagcaaattgactggatacaaa 323

                                                                       
Query: 124 attaactcaaagaaatcaccagccctcctttatgcaaacaatcaataagctgagaaagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attaactcaaagaaatcaccagccctcctttatgcaaacaatcaataagctgagaaagaa 383

                                                                       
Query: 184 gttaggggataacagtaggggatgaagatgatacctagaggaaggctgtaccttatcaaa 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttaggggatagcagtaggggatgaagatgatacctagaggaaggctgtaccttatcaaa 443

                                                                       
Query: 244 ggagaaggggagagaggaagcaaaggaggttccgaatgaggaggtacaagaaggagaggt 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 ggagaaggggagagaggaagcaaaggaggttccgtatgaggaggtacaagaaggagaggt 503

                                                                       
Query: 304 agagctgataatgggatgtaaagtgagtaaataaataaacattctatttcctttaagagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagctgataatgggatgtaaagtgagtaaataaataaacattctatttcctttaagagt 563

                                                                       
Query: 364 catgctcattgatgagaatcctgggttcattttcaattaattctcattatatgtgcttta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgctcattgatgagaatcctgggttcattttcaattaattctcattatatgtgcttta 623

                                                                       
Query: 424 attatttatttaacaagtcttccttgcctgattacaagacccattagaacaaggacaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attatttatttaacaagtcttccttgcctgattacaagacccattagaacaaggacaatg 683

                                                                       
Query: 484 tctatcttcacatattgcttaatctcagcactgagtccaaatgctaacacctataacatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctatcttcacatattgcttaatctcagcactgagtccaaatgctaacacctataacatt 743

                              
Query: 544 gttgcaagtataactggta 562
           |||||||||||||||||||
Sbjct: 744 gttgcaagtataactggta 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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