BAC Information

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BAC

Clone NameMSMg01-371E13
Chromosome13 (Build37)
Map Location 9,272,679 - 9,273,206
singlet/doubletsinglet
Overlap genenone
Upstream geneAdarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371E13.T7 (MSMg01no371_e13.b1)MSMg01-371E13.TJ (MSMg01no371_e13.g1)
ACCAG477830AG477831
length7641,467
length of high quality
(start - end)		523 (72 - 594)---
definitionCHROMAT_FILE: MSMg01no371_e13.b1 PHD_FILE: MSMg01no371_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:39 2005CHROMAT_FILE: MSMg01no371_e13.g1 PHD_FILE: MSMg01no371_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTGTTGGCTCAGAATTTTCCCCGTCAG
CTCTCTTCTCCCTTACTATGTTCCTATCACTCTGATTTCATCCAATTTGA
CCTTCAGTTAGTCTTAATCTTTAGCCTGTGGGTAGACTCCTTGAAGACCA
GGAACAAACCTCTGAAAATCTCATTCATTTGACAAGCTCTCTTATGAAGA
TCTGCTTCTCAGTAGAGAACTGTGGGAGAGAAATAAGCCACTAGCAATGA
TAAACTTGAAAACTGTGAGCTCCAGACTGCCGGTTCTTTTGGTTCTATAC
CGGGTCCTATGCTGTGAGGTATGTCCATTGGTTTGGTGTTTACTTAAGAA
CATATTAAAATACAGTAGATACTGCTGGCACAATGTTTGGCCCCATTCTT
TTCATTATGATCAATCTAGCCACTAATTAAGAAATCTCTAAAGATCTCAT
TCCACTTTCCATGTTATAGATGAAAAACCTTAAGGAAGTAAAATATAATA
AAACCAGGACTGAAACCCTAGTCTCCATTACTGTCCCATAATGCTTTGTC
TGGACTTGGTTTTTTTTTTAAACCTTACTTTTTATCTTTTGCATAAAATT
GGTTTCCATTTTTGGGTGGTAAGGGGTTCCATGTGGCTGGAAAACTGGAA
GGGGTTCTCAGGGTTTTCCTTTCTTTTCCCATTTGTTGGTTGGCCGGGTT
ATTTTGTAAAAAAA

ATGTGTTTCTGATTCTGTGTGACANTACACAAAANCAATCTCGCTGTGCT
CTTGTTCCATATTGCTACGCTGTGGTGTGTGTGTGGTGAGGTGGTGTCTA
GTATATATCTGATGAATATAGGGATGAGTTATCTTTTGTGTTAGTGATGA
CTTGCTTCTAGCACACAACACACATACTACTCTCAATATTATGCCGCCTT
ATTCGCATACTGTAGCCGGCGTGGTGAGTTTATCGTGTGTAGCAGTGGAG
CTCTATGTGAGACGTAGAGCACGAGTGACTCTTGCTCTGTTATTCATGTC
GTCGTGTTGGTGACAGCTGCGTGTCGGTAGCCGACAGTGTCTTGGTGCTA
TGGCCGCGGGTTGCGAGTACTGAAGTGCCTGCGCCGCAGTCCGTCGTTGT
TTGCTCAGCTATAGATACTATACGATGCAGCTGCTTCATACGTTCGATAA
CATGACAGTCCTTGATCTATAGATATAGGATGAGCTGTCGTGTCNACAGA
GAATAGGAATCTTATATGACGCGTTCAGTGCGACGTAGGTTGAGTCGTGG
TGCTTGGTATCGCAATATGATTTATATCATAAGAGGCGTGACGTATGCTC
GATCGCGCGACTGAGTCTAGTGGTCTCTATTATGTCAATGTGCATCATGN
CATGCCTTCACTGTGAGAGCTCTTACGTTACGATTACGTCCGAGTCTGGC
TGCATATTCACGTCGCATGTGTATGATACATGAGCATACAGAGAGTGTAA
TCGAGGGTGTGCTGTTGCGTGAGCGGATATGTAGTGAGTGATATGACGTG
TTGTGGTGCGCGTTATCTACGATGTGCTCTAGGTCGATCGTGCGTGATGG
AGCGAGATGCTAACTTCATCACTTTGANGATCNTATCACTNCGCTCTGAT
CTGAGCGCCGTGTAGCTGTGACGCGTACATGNCGCGTATTGTCCGCGATG
TTGTACACGTCGCCTGGCTACACCATTACATGTATTGTGCCGCGATGCGT
AGCGCCGTAGTGCATGTATTGATGACTGATAGTCGNACGATCATATAGTA
CGACAGATGAGCGCAGATAGTGAGCAAGCGACATGCAGTTTACACTAGAT
GAGTGACGAGATGTCTGCAACGTCGCTGATCAGCTGTGCTGATCGCGCGT
ATAGTTAGCGATCAGGACGACNTGAGATCGCTGAGCACGAGAGCTGTAGT
GACAGTGCGANTNAGGATATGCATAGTACTGTATATATGTGAGTGCGTTG
AGGTNGTCTGAGTTGTNGCAGTGGATGCGTGTATCGTGCGCTATGCTCAC
GGCTTGACGCGGCGCGAGAGTAANTNCGTCATGAACACGCGTGCGTCATA
AGTGACGCTGCTATATGAGATGNATGCGTATNGTATAGNGTAGTGTCAGA
TACGCGGTGATNCAGTACGAATCGGATATATTCGCGAGATATCGACGGTG
CGGATACGCGACGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_e13.b1 MSMg01no371_e13.b1 CHROMAT_FILE:
MSMg01no371_e13.b1 PHD_FILE: MSMg01no371_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:39 2005
         (523 letters)



>mm_chr13_9272479_9273406
          Length = 928

 Score =  975 bits (504), Expect = 0.0
 Identities = 520/528 (98%), Gaps = 5/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgttggctcagaattttccccgtcagctctcttctcccttactatgttcctatcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tcttgttggctcagaattttccccgtcagctctcttctcccttactatgttcctatcact 669

                                                                       
Query: 61  ctgatttcatccaatttgaccttcagttagtcttaatctttagcctgtgggtagactcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctgatttcatccaatttgaccttcagttagtcttaatctttagcctgtgggtagactcct 609

                                                                       
Query: 121 tgaagaccaggaacaaacctctgaaaatctcattcatttgacaa-----gctctcttatg 175
           ||||||||||||||||||||||| ||||||||||||||||||||     |||||||||||
Sbjct: 608 tgaagaccaggaacaaacctctggaaatctcattcatttgacaagtgttgctctcttatg 549

                                                                       
Query: 176 aagatctgcttctcagtagagaactgtgggagagaaataagccactagcaatgataaact 235
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aagatctgcttctcggtagagaactgtgggagagaaataagccactagcaatgataaact 489

                                                                       
Query: 236 tgaaaactgtgagctccagactgccggttcttttggttctataccgggtcctatgctgtg 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 488 tgaaaactgtgagctccagactgccggttcttttggttctataccgggtcctatactgtg 429

                                                                       
Query: 296 aggtatgtccattggtttggtgtttacttaagaacatattaaaatacagtagatactgct 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggtatgtccattggtttggtgtttacttaagaacatattaaaatacagtagatactgct 369

                                                                       
Query: 356 ggcacaatgtttggccccattcttttcattatgatcaatctagccactaattaagaaatc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcacaatgtttggccccattcttttcattatgatcaatctagccactaattaagaaatc 309

                                                                       
Query: 416 tctaaagatctcattccactttccatgttatagatgaaaaaccttaaggaagtaaaatat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctaaagatctcattccactttccatgttatagatgaaaaaccttaaggaagtaaaatat 249

                                                           
Query: 476 aataaaaccaggactgaaaccctagtctccattactgtcccataatgc 523
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aataaaaccaggactgaaaccctagtctccattactgtcccataatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 928
Length adjustment: 10
Effective length of query: 513
Effective length of database: 918
Effective search space:   470934
Effective search space used:   470934
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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