BAC Information

Click to search

BAC

Clone NameMSMg01-371F13
Chromosome13 (Build37)
Map Location 87,220,486 - 87,220,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371F13.T7 (MSMg01no371_f13.b1)MSMg01-371F13.TJ (MSMg01no371_f13.g1)
ACCAG477877AG477878
length852760
length of high quality
(start - end)
105 (74 - 178)572 (43 - 614)
definitionCHROMAT_FILE: MSMg01no371_f13.b1 PHD_FILE: MSMg01no371_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:45 2005CHROMAT_FILE: MSMg01no371_f13.g1 PHD_FILE: MSMg01no371_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCACATGCCACATATTACGAATGCTT
TATTTGCATCTATCCATCTGATTGTTTTATTGGCAATATAAATTTAGTTC
TTTCATGATTTCCATTTTATGAACAAAAAAAAACAGTAAAAAATTAGTAA
ATGACTCAAACCTAAAATTCAGATAGTGAAACTATGTNATGACAGTAAAT
ATGTTTGATTTGAAATGAAAATCGGTTCCAGAATTTATCNNNNNNNNNNN
CNATTATTNATAACTNNNNTNNNTNNNAAGATTNNNATTNTTGAATAAAA
TANNAAAAATAGAGNNNNNNNNNNNNAATTTNNNNNNNNNNNNNNNNNGT
GGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GAGGGGGGGGGGGGGAAAAAACTANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCN
NNNCNNNNNNNNNNNNNNCNNNNNNNNTNNTTTNNNNTNCNNNTNNTTNN
TTTCTTCNTTNNNNTTTTTNTNNNCTTTTTTTTTTNCCTTTTNNTNNTNN
CNNNNCTTNNCCCTTTCTTTCCTTTTNCNNNCTCTTTTNTCTTTTCCTTT
CCTCTTNCCCCCTCCTTCCNNNCTCTTCCTCTTCTNNNCCCTNNTCTTCC
TTCTCTTTTTCTCTTCTTTCTTTCCCTCCTCCTTTCTTTTTTCTGCTGGT
GG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCCGAGGAATATTGAAAGGCTGAGAAGCACCTGAGAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAGTCAAAACAACCCTGAGATTCCA
TCTCACAACAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGTCATTTCCTCAGAAA
ATTGGACATAGTAGTACCGGAGGATCCACAATACTTCTCCTGGGCATATA
TCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TAAACAGAGGAATGGATACAAATAATGTGGTACATTTACACAATGGAGTA
CTAGTCAGCTATTAAAAAGAATGAATTTATGAAATTTCTAGGCAAATGTT
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAC
TCAAATGAAATGTAATCACTGATAAGTGGATATTAGCCCCGAAACTTAGT
ATAGCGAGATATAATGAACAATATGCAAAACACATGAAACTGAAGAACAA
AGACAAAGTGTGGACCCTTTGCTCCCTTAGATTGGAAACAACCCCCATGT
AAGGGAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_f13.b1 MSMg01no371_f13.b1 CHROMAT_FILE:
MSMg01no371_f13.b1 PHD_FILE: MSMg01no371_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:45 2005
         (105 letters)



>mm_chr13_87220286_87220790
          Length = 505

 Score =  195 bits (101), Expect = 5e-55
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacatgccacatattacgaatgctttatttgcatctatccatctgattgttttattgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 accacatgccacatattacgaatgctttatttgcatctatccatctgattgttttattag 260

                                                        
Query: 61  caatataaatttagttctttcatgatttccattttatgaacaaaa 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatataaatttagttctttcatgatttccattttatgaacaaaa 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)