BAC Information

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BAC

Clone NameMSMg01-371I06
Chromosome13 (Build37)
Map Location 110,533,168 - 110,720,576
singlet/doubletdoublet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371I06.T7 (MSMg01no371_i06.b1)MSMg01-371I06.TJ (MSMg01no371_i06.g1)
ACCAG478003AG478004
length753763
length of high quality
(start - end)		443 (73 - 515)546 (43 - 588)
definitionCHROMAT_FILE: MSMg01no371_i06.b1 PHD_FILE: MSMg01no371_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:59 2005CHROMAT_FILE: MSMg01no371_i06.g1 PHD_FILE: MSMg01no371_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,720,137 - 110,720,576)(110,533,168 - 110,533,706)
sequence
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCGCGAATTCTCTCTTTGATTTCAAGTAGCCCATG
CTCTTAAGATGAAGTTGCCATTAAGGACTACCTGACCATGTCAAAGTGGG
GAGGGGTGGGCACTGCTTTCGGTTAGTGTGAGCCTCTCAGCAGACAGGAC
AGGACGTGCCAGCCACACTGAACATCTCTCAGTACAGTGAAGCACCAAGA
TGCTCATTTCCTGAAGACCACTGGGCAAACAAGACAGGAATCCACAGACC
CATCGTCTACCTTACACGTAGACTGGTAGGATGACTACGTTGTTGGACAT
GGCAGCTGCGACATTCTCATGTTCATGCTACCTGCAGATATCTGCAGACT
TGTCATGCAAATGATTTGGGTTTGCTGCAAGAATGAGGTAGCTGATGTAC
AATCATTCTGAGAATTTGTTTATATAATTCATCAAAATCGTCAGTTAGTG
CAATAAAATAACCAAGGTTAAAAAGGTCACTGAAGAGAGTCTCCTGTGCT
GACTCCCCTGAATCGTGCTGTATCCTAACCTAGCCCCATACTCCTCTCTC
CCTTTTGGCTACAACATTGAAGCATGGGTTGGAATATCCCTAAATCACAT
GCCTGGCTCCCTCACAGGTCTTGCGGTGTTCCTAAAAAGGTACCGTTCCT
TTTAACTATTCTCTGAGCCTCTTTTTAAGGCTCTCCCTATAGTACCTTCC
CCT

TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGG
AATTCAAGGACTGTGTCTCCTATTGACAGGGTCAAGTACTATCCTAGGCA
ACACAGCGAGACCCCGCCTCAAAGTCAAAAGTACAAATAGGGCTGGAGAT
GTAGCCCCCCAGTGGTAGAGTGCCTACCCAGCATAATATATGCAAGACTC
ATACAGTGGAGAAGATCAATAAGCTGATCAAGCAAGAGAACAATACACTA
GAGGGATTGATAGAAGAATACTTAGTTCAAGAATCCCCAAGGATAGCCAA
AAAATAAGCTGTCTAGTCCAACTTCATTAAAAGTGAAACAACTAAATAGA
CAAAGCACCTCTGCCAAGGACCACAGAACATTGAGGAAGAGGGGCGGAAA
GAATATAAGAGCCAAAGAACAGAGAGACATGTGGTAAAGACATCTGGATG
TGACATGGTGCGGCCATTGCAATCATGGACTCTCTGCAGCTCTGATTGTC
TTCAGAAGACCAACACAAGATTGGGCCTGCCAGAAATTCACCATGGATGG
GGAAGGGGCCCATGAGGCTCCACCCGTTCCTAAGGGACTATGGTTAGTGA
ACAGGCAAGACATGCTAATGAAACTCAGTGGACCCCACAAAGGGAGACAT
GGAAGTGTGAGGGAGACTTTGTTGAGAAAAAAGAATGGGAGGGAAGGGGT
TATAAACAACTAAAATTTGTTTTTTTAAGGATAAAAAGCATTGGGCCTTT
TAAAATTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_i06.b1 MSMg01no371_i06.b1 CHROMAT_FILE:
MSMg01no371_i06.b1 PHD_FILE: MSMg01no371_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
         (443 letters)



>mm_chr13_110719934_110720776
          Length = 843

 Score =  804 bits (416), Expect = 0.0
 Identities = 434/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   tctctttgatttcaagtagcccatgctcttaagatgaagttgccattaaggactacctga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctctttgatttcaagtagcccatgctcttaagatgaagttgccattaaggactacctga 584

                                                                       
Query: 64  ccatgtcaaagtggggaggggtgggcactgctttcggttagtgtgagcctctcagcagac 123
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 583 ccatgtcaaagtggggaggggtgggcactgctttcggctagtgcgagcctctcagcagac 524

                                                                       
Query: 124 aggacaggacgtgccagccacactgaacatctctcagtacagtgaagcaccaagatgctc 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtacaggacgtgccagccacactgaacatctctcagtacagtgaagcaccaagatgctc 464

                                                                       
Query: 184 atttcctgaagaccactgggcaaacaagacaggaatccacagacccatcgtctaccttac 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 463 atttcctgaagaccactgggcaaacgagacaggaatccacagacccatcgtctaccttac 404

                                                                       
Query: 244 acgtagactggtaggatgactacgttgttggacatggcagctgcgacattctcatgttca 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 acgtagactggtaggatgactacgttgctggacatggcagctgcgacattctcatgttca 344

                                                                       
Query: 304 tgctacctgcagatatctgcagacttgtcatgcaaatgatttgggtttgctgcaagaatg 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 343 tgctacctgcagatatctgcagacttgtcatgcaaatgatttaggtttgctgcaagaatg 284

                                                                       
Query: 364 aggtagctgatgtacaatcattctgagaatttgtttatataattcatcaaaatcgtcagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggtagctgatgtacaatcattctgagaatttgtttatataattcatcaaaatcgtcagt 224

                               
Query: 424 tagtgcaataaaataaccaa 443
           ||||||||||||||||||||
Sbjct: 223 tagtgcaataaaataaccaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_i06.g1 MSMg01no371_i06.g1 CHROMAT_FILE:
MSMg01no371_i06.g1 PHD_FILE: MSMg01no371_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
         (546 letters)



>mm_chr13_110532961_110533906
          Length = 946

 Score =  996 bits (515), Expect = 0.0
 Identities = 533/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaaggactgtgtctcctattgacagggtcaagtactatcctaggcaacacagcga 67
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaaggactgtgtcagctattgacagggtcaagtactatcctaggcaacacagcga 267

                                                                       
Query: 68  gaccccgcctcaaagtcaaaagtacaaatagggctggagatgtagccccccagtggtaga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaccccgcctcaaagtcaaaagtacaaatagggctggagatgtagccccccagtggtaga 327

                                                                       
Query: 128 gtgcctacccagcataatatatgcaagactcatacagtggagaagatcaataagctgatc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgcctacccagcataatatatgcaagactcatacagtggagaagatcaataagctgatc 387

                                                                       
Query: 188 aagcaagagaacaatacactagagggattgatagaagaatacttagttcaagaatcccca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagcaagagaacaatacactagagggattgatagaagaatacttagttcaagaatcccca 447

                                                                       
Query: 248 aggatagccaaaaaataagctgtctagtccaacttcattaaaagtgaaacaactaaatag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggatagccaaaaaataagctgtctagtccaacttcattaaaagtgaaacaactaaatag 507

                                                                       
Query: 308 acaaagcacctctgccaaggaccacagaacattgaggaagaggggcggaaagaatataag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acaaagcacctctgccaaggaccacagaacattgaggaagaggggcggaaagaatataag 567

                                                                       
Query: 368 agccaaagaacagagagacatgtggtaaagacatctggatgtgacatggtgcggccattg 427
           ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 568 agccaaagaacagagagacgtatggcaaagacatctggatgtgacatggtgcggccattg 627

                                                                       
Query: 428 caatcatggactctctgcagctctgattgtcttcagaagaccaacacaagattgggcctg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 caatcatggactctctgcagctctgattgtcttcagaagaccaacacaagattgggcctg 687

                                                                      
Query: 488 ccagaaattcaccatggatggggaaggggcccatgaggctccacccgttcctaagggac 546
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 ccagaaattcaccatggatggggaaggggcccatgaggctccacccattcctaagggac 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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