Query= MSMg01no372_h20.b1 MSMg01no372_h20.b1 CHROMAT_FILE:
MSMg01no372_h20.b1 PHD_FILE: MSMg01no372_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:15 2005
(518 letters)
>mm_chr13_89491213_89492131
Length = 919
Score = 988 bits (511), Expect = 0.0
Identities = 517/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 1 gtcattccttttaga-tttttttttaactttggcatttattttaatctttaattcctcag 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtcattccttttagattttttttttaactttggcatttattttaatctttaattcctcag 660
Query: 60 tgtttgatacttagaagatgttgttaaggttttctttccagaagctatttggtgacctca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgtttgatacttagaagatgttgttaaggttttctttccagaagctatttggtgacctca 600
Query: 120 ctttgcaagcactcctctttctatagcatttctgaatactgacaagaaagcccaaatatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctttgcaagcactcctctttctatagcatttctgaatactgacaagaaagcccaaatatc 540
Query: 180 acccaggaccttgtgtccagaactataaactttatctcagagcctgaggtttttaataag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acccaggaccttgtgtccagaactataaactttatctcagagcctgaggtttttaataag 480
Query: 240 ttttaaaacactgggctctgaaatataatttcatacagggcctaaaatttatgtagtcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttaaaacactgggctctgaaatataatttcatacagggcctaaaatttatgtagtcag 420
Query: 300 ttctgtagctagctgttgatcacttcagggcattaagtacaatttaatgtgtttataata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttctgtagctagctgttgatcacttcagggcattaagtacaatttaatgtgtttataata 360
Query: 360 ttacattccttagcatgtagttatttatttgctaaatatttcctgattgttcaggaaatc 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 359 ttacattccttagcatgtagttatttacttgctaaatatttcctgattgttcaggaaatc 300
Query: 420 ctctttgtggaccctagtcagggatcaagagtcgaggctttaccaatctctttgtgtgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctctttgtggaccctagtcagggatcaagagtcgaggctttaccaatctctttgtgtgta 240
Query: 480 aatcattttacagtggatatgaagtttattatataattg 518
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatcattttacagtggatatgaagtttattatataattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space: 461772
Effective search space used: 461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_h20.g1 MSMg01no372_h20.g1 CHROMAT_FILE:
MSMg01no372_h20.g1 PHD_FILE: MSMg01no372_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:15 2005
(439 letters)
>mm_chr13_89287162_89288000
Length = 839
Score = 772 bits (399), Expect = 0.0
Identities = 422/437 (96%), Gaps = 12/437 (2%)
Strand = Plus / Plus
Query: 3 aaaaaaaaaggcaaaggtcttattatcctaaagattttgggggttttgtctggaaatgat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaaaaaaaggcaaaggtcttattatcctaaagattttgggggttttgtctggaaatgat 262
Query: 63 aagaaagtaaaatctgaaaaaagaaggtgtctctaaagtgtggaagtacatcttggtgaa 122
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagaaagtaaactctgaaaaaagaaggtgtctctaaagtgtggaagtacatcttggtgaa 322
Query: 123 acaaagttcccatgcaatatttatcaaggatttttcaactggctcttaactttgtcaaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaagttcccatgcaatatttatcaaggatttttcaactggctcttaactttgtcaaag 382
Query: 183 ctggaattttaatgatttgctaattgtcttgttacgaatacccaccaaaatatccagtag 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctggaattttaatgatttgctaactgtcttgttacgaatacccaccaaaatatccagtag 442
Query: 243 gaagacatctatttgtacaagtacaatcatttgaaaaaggagccagtctgatttatttat 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaagacatctatttgtacaggtacaatcatttgaaaaaggagccagtctgatttatttat 502
Query: 303 ttatttatttatttatttatttatttatttatttatttatttatttattttgatcatagt 362
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 ttatttatttatttatttatttatttatttatttattt------------tgatcatagt 550
Query: 363 ctctagtatggagttgggaaagtaagttccttgctctctaatgagggtataagtggatta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctctagtatggagttgggaaagtaagttccttgctctctaatgagggtataagtggatta 610
Query: 423 attactcaaatactgtt 439
|||||||||||||||||
Sbjct: 611 attactcaaatactgtt 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
