Query= MSMg01no372_i22.b1 MSMg01no372_i22.b1 CHROMAT_FILE:
MSMg01no372_i22.b1 PHD_FILE: MSMg01no372_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:20 2005
(504 letters)
>mm_chr13_60772317_60773217
Length = 901
Score = 891 bits (461), Expect = 0.0
Identities = 493/507 (97%), Gaps = 9/507 (1%)
Strand = Plus / Minus
Query: 1 aaaataaaatggaacaccgaaccacagctgtctgatgctggaagctgaacgcggctcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaataaaatggaacaccgaaccacagctgtctgatgctggaagctgaacgcggctcctc 465
Query: 61 aaaaggagtagcaggaagattaagctgctgcctgcggagctctgtagtcacatcctcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaaggagtagcaggaagattaagctgctgcctgcggagctctgtagtcacatcctcaga 405
Query: 121 gaaggagctgggggaacaagct--gggctcaaagcctgtgggctcaaactgacctgtgga 178
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaaggagctgggggaa-----tgagggctcaaagcctgtgggctcaaactgacctgtgga 350
Query: 179 ctgttagacaaggtgacagtttgggtctgggctttggtttttaagacaacagtgtctggc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgttagacaaggtgacagtttgggtctgggctttggtttttaagacaacagtgtctggc 290
Query: 239 aaaggacacgaccctgtggcctctctcatcctgggcatgagaacacactggcagatactt 298
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct: 289 aaaggacacgaccctgtggcctctctcaccctgggcgtgagaacacactggcagacactt 230
Query: 299 gtggaaacaacataaactcttttccttccca-agcctttaaagtgtaacttctggctcag 357
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 229 gtggaaacaacataaactcttttcctt-ccagagcctttaaagtgtaacttctggctcag 171
Query: 358 ggaatcagcttctaggaatctatcttaaggagctaagcaggggcacttagatcttttcac 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 170 ggaatcagcttctaggaatctatcttaaggagctaagcaggggcactgagatcttttcac 111
Query: 418 aagaatggtgtgatcagggccaagggctgatctgatcacaagagacccacacagagtgac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aagaatggtgtgatcagggccaagggctgatctgatcacaagagacccacacagagtgac 51
Query: 478 ctgacgccagcctccaaaccaaaaccg 504
||||||||||| |||||||||||||||
Sbjct: 50 ctgacgccagcttccaaaccaaaaccg 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 901
Length adjustment: 10
Effective length of query: 494
Effective length of database: 891
Effective search space: 440154
Effective search space used: 440154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_i22.g1 MSMg01no372_i22.g1 CHROMAT_FILE:
MSMg01no372_i22.g1 PHD_FILE: MSMg01no372_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:20 2005
(442 letters)
>mm_chr13_60572231_60573072
Length = 842
Score = 816 bits (422), Expect = 0.0
Identities = 437/442 (98%)
Strand = Plus / Plus
Query: 1 ctacgtaggagcgaaggagaaacaagagggagggtgtgggaggcacgagcgatgactgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacgtaggagcgaaggagaaacaagagggagggtgtgggaggcacgagcgatgactgtt 260
Query: 61 caaactatggagagcccagaaaaagctttcagaagaagagctatcctccaacactaccct 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaactatggagagcccaggaaaagctttcagaagaagagctatcctccaacactaccct 320
Query: 121 cgggttgctgaacgacaaatgtggtctccaagcaaaggccaaataagaactgaatgtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgggttgctgaacgacaaatgtggtctccaagcaaaggccaaataagaactgaatgtaag 380
Query: 181 aggcagcatgatttaaaacagtgcctgggaccagccttagcatctcgaaggagatgtgct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aggcagcatgatttaaaacagtgcctcggaccagccttagcatctcgaaggagatgtgct 440
Query: 241 ataaaactgactctcagcgcaaagaatagaggcgcctgcctcacaggagcatctgccatg 300
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagctgactctcagcccaaagaatagaggcgcctgcctcacaggagcatctgccatg 500
Query: 301 cagggaggactgaacaatgcagttgagaggagcctgtgcaggcaggtaaaaggtttgggc 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggaggactggacaatgcagttgagaggagcctgtgcaggcaggtaaaaggtttgggc 560
Query: 361 taagcccgcacagcagggtgtgacagaaagcattctaaaagggatgcacatctctaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagcccgcacagcagggtgtgacagaaagcattctaaaagggatgcacatctctaggtc 620
Query: 421 tctggctcatctggggaaaccg 442
||||||||||||||||||||||
Sbjct: 621 tctggctcatctggggaaaccg 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
