BAC Information

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BAC

Clone NameMSMg01-372P07
Chromosome13 (Build37)
Map Location 64,164,864 - 64,165,312
singlet/doubletsinglet
Overlap geneHsd17b3
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
Downstream geneSlc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372P07.T7 (MSMg01no372_p07.b1)MSMg01-372P07.TJ (MSMg01no372_p07.g1)
ACCAG479099AG479100
length722737
length of high quality
(start - end)
501 (66 - 566)536 (77 - 612)
definitionCHROMAT_FILE: MSMg01no372_p07.b1 PHD_FILE: MSMg01no372_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:49 2005CHROMAT_FILE: MSMg01no372_p07.g1 PHD_FILE: MSMg01no372_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCTTACACCACACATTANAAAGATAAGGCAAGGGGACTGGTG
AGATGGCTCAGCGTTTAAGAGTGCCGACTGCTCTTCCACAGGTCCTGAGT
TCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAAATCT
GATGCCGTTTTCTGGAGTGTCTGAAGACAGCTATAGTGTATAGTGTATAG
ACAAATATTTTTAAACAAAGATAAGGCAAGCAGAGTATGGCACACATGCC
TTTGATCCCAGCACTCCAGAGCCAGAGGCAGGTGGATCTCTGAGTTCAGA
CCAGCCTGGTCTACAGATGGAGTTGCAGGCCAGTCAGAACTGACTACATA
GAGAAACTTTGTATCACAAACAACAATAAATAAATAAAACCCAGATAAGG
TCATTGGCCCACCAGTCTAACATGAAGCACTGGCTGCTCTTCCAGAGGAC
CCAGGCCACATGGTGACTCACAACTGTTTTTAACCCCAGTTCTAGTAGCT
TCATTGTCCCCTTCTGGTCTCCATAGGGCATCATGGACACACATAGTATA
CAGACCTACATGCAGCATAACACCCATACACATAATATATTTAAAAGAAA
TTATTTAGTTAAAATTTAAGCTTTTAAAAAATGACATTTTAATGCTGTGG
AAGATGGGATACCTTGTCCCCG
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTTCTGTCAGAATGAGCACTC
TGTTTCCCTAGTAACTGCCCCTCTTCGTCTCTCCAATAGTCCACATTTGG
GTCACCTTATTACAACAACTGTTAGGGTCTGGTTTTCATCAACTGTTACT
CATTAAGAGCAAATAGTTGATAGTTTAATTTTTCTAGAGTAGGAAGGGGG
TAGCTTTGTATTCTAATTTGCAGTTTCTTGCTACCCAACTCTGGGCATCT
AACTGGGAAGATTAAAGATAATTTCTCCCAGTAACTGAGAGGCTGAGGCA
GGAGGATCACCACAAATTCAAGATCAGTTTGGGTTCCATAGTAAGACTGC
GGCTAGCCTTGGCCATATGCAACATAGATATGTTTCAAAAAATGAAATGA
ATAAAAAAAATTGAATTTCAAAAGATGTCAGCAAGAGCCCTGAAGAGCAT
AGGGGTGTCAGAGTGAAGACATTGCATCTAGGATGGATTGCACTATGTGA
CACATGTCCCTGCTGTGACAGGTTATCCCTGTGAGTGCAAAGGGACCCAG
GTGGTTCCATTGAGACCAAGAATCCCTTCCTCCTTTCCTCTTGTCTGAAG
CCATTTGCCCTTATTTTTTTAATTTTTTATTTTTTTTTTTGAAGCTTGCC
AGGGAAACAATTGTCCTGTTTGGAGTACCAAGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_p07.g1 MSMg01no372_p07.g1 CHROMAT_FILE:
MSMg01no372_p07.g1 PHD_FILE: MSMg01no372_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:49 2005
         (536 letters)



>mm_chr13_64164864_64165799
          Length = 936

 Score =  868 bits (449), Expect = 0.0
 Identities = 449/449 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcttctgtcagaatgagcactctgtttccctagtaactgcccctcttcgtctctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catcttctgtcagaatgagcactctgtttccctagtaactgcccctcttcgtctctccaa 390

                                                                       
Query: 61  tagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatcaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatcaactgt 330

                                                                       
Query: 121 tactcattaagagcaaatagttgatagtttaatttttctagagtaggaagggggtagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tactcattaagagcaaatagttgatagtttaatttttctagagtaggaagggggtagctt 270

                                                                       
Query: 181 tgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaagattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaagattaaa 210

                                                                       
Query: 241 gataatttctcccagtaactgagaggctgaggcaggaggatcaccacaaattcaagatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gataatttctcccagtaactgagaggctgaggcaggaggatcaccacaaattcaagatca 150

                                                                       
Query: 301 gtttgggttccatagtaagactgcggctagccttggccatatgcaacatagatatgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gtttgggttccatagtaagactgcggctagccttggccatatgcaacatagatatgtttc 90

                                                                       
Query: 361 aaaaaatgaaatgaataaaaaaaattgaatttcaaaagatgtcagcaagagccctgaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aaaaaatgaaatgaataaaaaaaattgaatttcaaaagatgtcagcaagagccctgaaga 30

                                        
Query: 421 gcataggggtgtcagagtgaagacattgc 449
           |||||||||||||||||||||||||||||
Sbjct: 29  gcataggggtgtcagagtgaagacattgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)