BAC Information

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BAC

Clone NameMSMg01-373A11
Chromosome13 (Build37)
Map Location 101,928,063 - 101,928,620
singlet/doubletsinglet
Overlap genenone
Upstream geneNaip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A11.T7 (MSMg01no373_a11.b1)MSMg01-373A11.TJ (MSMg01no373_a11.g1)
ACCAG479154AG479155
length7391,075
length of high quality
(start - end)		567 (15 - 581)---
definitionCHROMAT_FILE: MSMg01no373_a11.b1 PHD_FILE: MSMg01no373_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:54 2005CHROMAT_FILE: MSMg01no373_a11.g1 PHD_FILE: MSMg01no373_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCCTATATTCAGAGGATCCGCGGAATTCATGTACATCTGGAAGGAGTG
TACAGACACCACAAAGTTGTTCTTTGACCTCTATGTGTGCACCATAACAT
TCACTCTCCTCAATGATAGAAATAAAGTAAAGTAAACCATGAACACAGGA
AGGTGATAGGATGAAGGGAGTCAACAGGAGAAGGAAAGGGATTAGCGAAG
GCTATGGGGTGGGTTATAATCACAATAGATTGCACACATATACAAAATGG
TAAAAATAAAACCAATGTTAAAAACAGTACAAGCTTAAATTAAGGGCTAT
CCTGCATAGGATGTGACTTCTCTTCTCAAGTTTTTGAAAGGTTAAAGAAG
TGGCTATCTCTAGAAAACAGGCACACACGTGCCTTAGGGTTTGGCCTTAC
CTATTACATCACATTAGCCTGTGCAGTGTAATTTTTAAGGAAATCATGGC
TTATTAACAAAAATCAACAGAATAGAATGTCCGAAAGTGGCTGCACACGA
GTATGGTGGCAGGATTCTGATCAGAGCTTCCAGTCACTACATTACAGGGA
ACAGCCCTTCCAACAAATGTTGCTGGGAAGACTGGAGACCCACACTGGTG
AAAAAGAAACAAACTGTTTCTTACTGCATACACNAACAATGGCTTTGATG
GCTCCTGGGATTGAACATAAACCCCACATCCTAAACCTTCCGGGAAAGCA
CAAGAGGATATCTTGTCGGGCTATAGGCAGACTTCCTGG

CGTCGCTTCGCTGTGAGGGGCGCGAGACTCCCCCCCCCCCCCCCCCCCCC
CCCACCCCCCAAAGAAAGCGGGGAGAACGGGGGGGNNGNGGGTTTACCTA
GCCAGAAAGAGGGGCNNNNGNNGGTGCCCCTCACGCCAGAAAGGGGGNNN
GCGCGCCNNNNCNNCCCCCNCNNCCCGCCCGGCGCCTCCCGCGCCNCCAC
GNCCGCGCCCGCGGGCCCGGCCCGGCGGGCGCGCGCGCCGCGGCCGCCGG
CGCGCGGCGGCGCGGCCGGGGCGCCGGGCCCCGCCCGCCGCCCCCCGCGG
CCCGCGCCCGGGCGCGGCGCGCGCCGCGGCGCCCGCGACCCGCGCCCCGC
CGCCCACCGGCGAGCGCACCACAAGCACGCGACGCACAGCACCGACGCAG
CCACAACGACACGCCGAGCCCGGACACCGGGACCCCACAGCAAGCCCCCA
CGGAAACCGACCCGGACGCCCAACGCAAACAGCACGACAACACACGAGAC
CACCAAAGCCCCCCACCACGCACAGACCGGAGCCAGAGCGCAGGACGGAC
CCAAAGAACCACAGGAGAACCACAAAAACCAGGCGGAAGCGACCACGCGC
ACACCGGCGGCCGGACCACAAGACAGAAACCCAGACGAAGAGCACGCAAA
CACAACACGGGGACCCCGACGGCACACCCCACAACACGGNCGGCCAACAA
CCACACCCACCAGCAGACAGGCAAACACGGACGACACGCACCCGACACAC
ACAAGACCGCCCGATACGGACCACAGGAGTGCGTAACTGAGAGCAAGATA
GAAGACCGCGTTCAGAGGACATGGCCGAGTGCAGACACAGCCGATGACAC
TCGACAGCAGCCACATAAGAACCGAGCTCGCACAAAAGACCGGAAACGGA
TCCGACGGACCGCGAGGACCACACGCAGATAACGCCACAAGCACGGAGGC
GACCGCGGAGGACGCGCGCGGCAAACACGCTACAACAAAACCACCAAACT
ACGAAACAGACCGCGACACAAGCGCAGGCAGAAAACTAGCCCTGAATACT
GAGCAGAGAACAGACACGCACATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a11.b1 MSMg01no373_a11.b1 CHROMAT_FILE:
MSMg01no373_a11.b1 PHD_FILE: MSMg01no373_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:54 2005
         (567 letters)



>mm_chr13_101927854_101928820
          Length = 967

 Score = 1040 bits (538), Expect = 0.0
 Identities = 553/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattcatgtacatctggaaggagtgtacagacaccacaaagttgttctttgacctcta 69
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 210 ggaattcatgtacatctggaaggagtgtacagatgccacaaagttgttctttgacctcta 269

                                                                       
Query: 70  tgtgtgcaccataacattcactctcctcaatgatagaaataaagtaaagtaaaccatgaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtgtgcaccataacattcactctcctcaatgatagaaataaagtaaagtaaaccatgaa 329

                                                                       
Query: 130 cacaggaaggtgataggatgaagggagtcaacaggagaaggaaagggattagcgaaggct 189
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 catgggaaggtgataggatgaagggagtcaacaggagaaggaaagggattagcgaaggct 389

                                                                       
Query: 190 atggggtgggttataatcacaatagattgcacacatatacaaaatggtaaaaataaaacc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atggggtgggttataatcacaatagattgcacacatatacaaaatggtaaaaataaaacc 449

                                                                       
Query: 250 aatgttaaaaacagtacaagcttaaattaagggctatcctgcataggatgtgacttctct 309
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 450 aatgttaaaaacagtacaagcttaaattaagggctatcctgcacaggatgtgacttctct 509

                                                                       
Query: 310 tctcaagtttttgaaaggttaaagaagtggctatctctagaaaacaggcacacacgtgcc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tctcaagtttttgaaaggttaaagaagtggctatctctagaaaacaggcacacacgtgcc 569

                                                                       
Query: 370 ttagggtttggccttacctattacatcacattagcctgtgcagtgtaatttttaaggaaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttagggtttggccttacctattacatcacattagcctgtgcagtgtaatttttaaggaaa 629

                                                                       
Query: 430 tcatggcttattaacaaaaatcaacagaatagaatgtccgaaagtggctgcacacgagta 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcatggcttattaacaaaaatcaacagaatagaatgtccgaaagtggctgcacacgagta 689

                                                                       
Query: 490 tggtggcaggattctgatcagagcttccagtcactacattacagggaacagcccttccaa 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tggtggcaggattctgatcagagcttccagtcactacattacagggaacagcccttccaa 749

                             
Query: 550 caaatgttgctgggaaga 567
           ||||||||||||||||||
Sbjct: 750 caaatgttgctgggaaga 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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