BAC Information

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BAC

Clone NameMSMg01-373B09
Chromosome13 (Build37)
Map Location 32,130,688 - 32,131,096
singlet/doubletsinglet
Overlap geneGmds
Upstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373B09.T7 (MSMg01no373_b09.b1)MSMg01-373B09.TJ (MSMg01no373_b09.g1)
ACCAG479198AG479199
length7041,126
length of high quality
(start - end)		470 (10 - 479)---
definitionCHROMAT_FILE: MSMg01no373_b09.b1 PHD_FILE: MSMg01no373_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:58 2005CHROMAT_FILE: MSMg01no373_b09.g1 PHD_FILE: MSMg01no373_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTCAGAGGATCCGCGGAATTCTACATGGCTGAACAATGATTATCTTA
ACATTTTTGGATATCCCAATGTCTCTGTAATTGGAAGACTGTGTCAGGGA
GTTAGTTTTATATTTCACAGCTAGTATTATCATGAACCAGATGTAGTAGG
TGACATGATGATGCTGAACATGTGTTTAAAGTGTCTTAAGTGTTTTACCC
ACTGATGTTGGTGAATCCAGCTGTTGAATGAAAACCTTTATAATTCACTT
AGGCCAGTGCTGCAGCCTATGCATATAGAACCTGCGTGTAGACAGACCAG
ATGCTTGGCCCTTGGCTGATATGCCCTGGGACTTCCTAGAAATTCTGACT
CCATTGCTGCCTTAGAAAGTTTGATGGGAACCGGTTGTTAGATACAACAC
CAAGGGAACATTTGCCTAATCTTACCTGAGTGCAGCCTCAACCTACTAGG
TCTTCTATTTTTGCATTTTGAAAATGAGATGGTCTCTAAGCTGAGTTTGG
GTCAGGTCATCATAAGGGAAGCACAGAATTGTTTTTTTCAGAACAGGGAT
ATAAAAGAATAGACTCTGTTTTGCTTACGGAGGGCTGGCTTGATGGNAAA
TGCCTGTTCTAACAACCCCAGAACTTTGGATCTTTGAAATATAACTTTTG
CCAAAGGCTGGGTGAATTTAAAGGCCCACTTTGGCCAAATTTTCAAAGTC
TCCN

AAAACAACACAATAAAGAAATATTTGTGTCATCTGGTCTCTCGTTTACAT
ATTTATAAATCTTACACATATGTCATACAAGCTGAAATTCTTCTGTCCGG
CTCGTTCTGCTCCTGTNCTATATCGTAGTTGGCACTCTTATACGAAGTGA
TCCGCCGGTAATTCACTCGTTATACCCCTCTATCCTTGATGAGCAATTAA
GAATTGTCACAAATAGTATAATAGTATAAATATGCACATCATCAACACAG
GTAGAGATGATAAAAACCTCGATAGTTCATAATCGTATATTGTTCTTATC
CTCTTGTTTTATTATATTCATGTTTTATACTTAATACTTTAGAGATATTT
AGACAGTCTAAATAATTGAACTCGCCATACTATATAAACTTTGTAACCGC
TTATTTCTCGTATGTCTTGTTTCACATTGAACCTAATTCCTCTTAATCTT
CCTCAGCGCTTAGTCTGCTCGGTCTATTCTCATTATTACGCCACATGCAC
TTATACATTCTCTACTAATACTTAAATTCACTCTTTTATTACTTCACTAC
TCTAAACAGTTGTTCGTTTCACCATCCATCAACTCTATTAAATTCCAGCA
ATATGCTCTATATTTTCGCAATTCAAACTCGATTAAATACCCGTCTATAT
TCTAACTTAATTATTACTTCATTTCACATATATAATTAGATAAATTGACC
TATGAATTCTACATTTTCATCGTGATATATTTTCTTTCTTTTTCTATGGC
ATGTCTTATCGACTTGTTCCATTTCAATCTCGTATATTAACTTGACAGAC
ATCTGTTGAAATATACTATAATAGATATACACTCATATTAATTATTAATA
CCTACACCCACAATCCTTTTATACATTGTTCTGGCTCCCCTCCTGTATTA
GCTTATTGTTCAGTTTTATGTAATTCTTTACCTACCCAATTCTATTACCA
TTATATCAATATATATTCGNACTGCATTAATCACCCCACGCATATCATTT
GCTTTCATCTTTTACGTTCCTTATTCTTTCTATACCGTGCCCGACTTAAT
TATTGAATATCCTATATCCACACTTCCTTATTACCACCACCAATCCATCA
TAATGAGTAACAATATGTAGTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_b09.b1 MSMg01no373_b09.b1 CHROMAT_FILE:
MSMg01no373_b09.b1 PHD_FILE: MSMg01no373_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:58 2005
         (470 letters)



>mm_chr13_32130427_32131296
          Length = 870

 Score =  714 bits (369), Expect = 0.0
 Identities = 402/419 (95%), Gaps = 10/419 (2%)
 Strand = Plus / Plus

                                                                       
Query: 52  atatcccaatgtctctgtaattggaagactgtgtcagggagttagttttatatttcacag 111
           ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 262 atatcccaatgtctctgtaattggaagactgt----------tagttttatatttcacag 311

                                                                       
Query: 112 ctagtattatcatgaaccagatgtagtaggtgacatgatgatgctgaacatgtgtttaaa 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctagtattatcatgaaccagatgtagtaggtgacatgatgatgctgaacatgtgtttaaa 371

                                                                       
Query: 172 gtgtcttaagtgttttacccactgatgttggtgaatccagctgttgaatgaaaaccttta 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgtcttaagtgttttacccactgatgttggtgaatccagctgttgaatgaaaaccttta 431

                                                                       
Query: 232 taattcacttaggccagtgctgcagcctatgcatatagaacctgcgtgtagacagaccag 291
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 432 taattcacttaagccagtgctgcagcctatgcatatacaacctgcgtgtagacagactag 491

                                                                       
Query: 292 atgcttggcccttggctgatatgccctgggacttcctagaaattctgactccattgctgc 351
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 492 atgcttggcccttggctgatatgccctgggacgtcctagaaattctgactccattactgc 551

                                                                       
Query: 352 cttagaaagtttgatgggaaccggttgttagatacaacaccaagggaacatttgcctaat 411
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 552 cttagaaagtttgatgggaaccggttgttagatacaacacaaagggaacatttgcctaat 611

                                                                      
Query: 412 cttacctgagtgcagcctcaacctactaggtcttctatttttgcattttgaaaatgaga 470
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cttacctgagtgcaacctcaacctactaggtcttctatttttgcattttgaaaatgaga 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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