Query= MSMg01no373_f09.b1 MSMg01no373_f09.b1 CHROMAT_FILE:
MSMg01no373_f09.b1 PHD_FILE: MSMg01no373_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:17 2005
(484 letters)
>mm_chr13_53998984_53999871
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 482/488 (98%), Gaps = 4/488 (0%)
Strand = Plus / Minus
Query: 1 ccaaccggtcaaatacacatctatccgagactcctggagaaagttcctataggtcgggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccaaccggtcaaatacacatctatccgagactcctggagaaagttcctataggtcgggta 629
Query: 61 gacttgtactagaaatcagagagagataaaaagatactgtatctgtcatgtggggctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gacttgtactagaaatcagagagagataaaaagatactgtatctgtcatgtggggctcac 569
Query: 121 catctgtagccagggttcttaggaccaaagctttaatttcagtggaataaagggtatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 catctgtagccagggttcttaggaccaaagctttaatttcagtggaataaagggtatagg 509
Query: 181 aggagcactacggcaacagtgtaactattgactcctggaggagagacaatggcaacaacg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggagcactatggcaacagtgtaactattgactcctggaggagagacaatggcaacaacg 449
Query: 241 ttactattgac---tcttccagcttagaggaggacaagccagtagagcaaatagaagaga 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttactattgactcttcttccagcttagaggaggacaagccagtagagcaaatagaagaga 389
Query: 298 ctgaccgtgattttgatgctcgttaagtttgggtttggtctccgtgggaagacactggct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgaccgtgattttgatgctcgttaagtttgggtttggtctccgtgggaagacactggct 329
Query: 358 ttcagcaccagcatctccgcttagtcacatagcttcacgaagaggttctttgctagctga 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcagcaccagcatctctgcttagtcacatagcttcacgaagaggttctttgctagctga 269
Query: 418 ggcagactggggtggggg-ggggcactcagctatcctcttccacatttctcttgacttgt 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggcagactggggtgggggtggggcactcagctatcctcttccacatttctcttgacttgt 209
Query: 477 tcctgttg 484
||||||||
Sbjct: 208 tcctgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 888
Length adjustment: 10
Effective length of query: 474
Effective length of database: 878
Effective search space: 416172
Effective search space used: 416172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_f09.g1 MSMg01no373_f09.g1 CHROMAT_FILE:
MSMg01no373_f09.g1 PHD_FILE: MSMg01no373_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:17 2005
(437 letters)
>mm_chr13_53846720_53847556
Length = 837
Score = 814 bits (421), Expect = 0.0
Identities = 433/437 (99%)
Strand = Plus / Plus
Query: 1 attctaagatcccaaggtagcgggggagaagtgaatgagaccctgtgccccaaagctatc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctaagatcccaaggtagcgagggagaagtgaatgagaccctgtgccccaaagctatc 260
Query: 61 gaggtgtctctgtcatgctaaatttaaagacacacggacaaggtttggctcttattgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtgtctctgtcatgctaaatttaaagacacacggacaaggtttggctcttattgaga 320
Query: 121 gagacagaaataaaacaagtggcaagaggggaatccagccttggttacctagctaagtgc 180
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gagacagaaataaaaaaagtggcaagaggggaatccagccttggttatctagctaagtgc 380
Query: 181 cttggggaggaaacttacacatattcggaataattagaggaagggaattctcactccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggggaggaaacttacacatattcggaataattagaggaagggaattctcactccatc 440
Query: 241 ttgagcaagaactacaagcttgtcacttaggtcaggcagagacagcagactcggacgcaa 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagcaagaactacaagcttgccacttaggtcaggcagagacagcagactcggacgcaa 500
Query: 301 ggagggagctcaggtggggtttcaaatgtaattttgagagtcttttctgaactgggcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagggagctcaggtggggtttcaaatgtaattttgagagtcttttctgaactgggcttc 560
Query: 361 cagagtttgaatcccactctgctcacacagcaatcatgtcaccgccacatgggtgctggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagtttgaatcccactctgctcacacagcaatcatgtcaccgccacatgggtgctggt 620
Query: 421 tcctggagccttcatgg 437
|||||||||||||||||
Sbjct: 621 tcctggagccttcatgg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
