Query= MSMg01no373_i23.b1 MSMg01no373_i23.b1 CHROMAT_FILE:
MSMg01no373_i23.b1 PHD_FILE: MSMg01no373_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:32 2005
(478 letters)
>mm_chr13_59836899_59837776
Length = 878
Score = 663 bits (343), Expect = 0.0
Identities = 385/423 (91%), Gaps = 37/423 (8%)
Strand = Plus / Minus
Query: 6 gaattctggaagagagcgagcccacaacatcagggatcatgtcatcaggtggaaacaaac 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattctggaagagagtgagcccacaacatcagggatcatgtcatcaggtggaaacaaac 364
Query: 66 taaactctgttgatggcctcgtggctccaaggttacccacaggttcagtctgtaacatgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taaactctgttgatggcctcgtggctccaaggttacccacaggttcagtctgtaacatgc 304
Query: 126 ttaccacataagcacaaagatctgatgtcaaattcccagcctccacataaaaagctgggc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttaccacataagcacaaagatctgatgtcaaattcccagcctccacataaaaagctgggc 244
Query: 186 acagcggtgtgtgcctgggaccc------------------------------------- 208
|||||||||||||||||||||||
Sbjct: 243 acagcggtgtgtgcctgggaccccagtgctggggggtgcagtggcgtgtgcctgggacct 184
Query: 209 cagtgctggggggtggagacttgctgaccagatggtagtctacccaaactgagtatatat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cagtgctggggggtggagacttgctgaccagatggtagtctacccaaactgagtatatat 124
Query: 269 atatgagttggaattggccaacatgcagaaaataagaaaccgtggggcgcttagttcatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atatgagttggaattggccaacatgcagaaaataagaaaccgtggggcgcttagttcatt 64
Query: 329 ctgtccccctcaaggctcagaagagggggtggaaaggtcgtaaggaccagagggaggcaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ctgtccccctcaaggctcagaagagggggtggaaaggtcgtaaggaccagagggaggcaa 4
Query: 389 cta 391
|||
Sbjct: 3 cta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_i23.g1 MSMg01no373_i23.g1 CHROMAT_FILE:
MSMg01no373_i23.g1 PHD_FILE: MSMg01no373_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:32 2005
(515 letters)
>mm_chr13_59659612_59660526
Length = 915
Score = 922 bits (477), Expect = 0.0
Identities = 500/515 (97%), Gaps = 12/515 (2%)
Strand = Plus / Plus
Query: 1 ctctttagcaaagtatggttaatggtcagaacaaaggctcagaagattggcccatacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctttagcaaagtatggttaatggtcagaacaaaggctcagaagattggcccatacagc 260
Query: 61 cgggtaacccacagcgtcattggctttgaagttattgcaaacacacaacttgcagatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggtaacccacagcgtcattggctttgaagttattgcaaacacacaacttgcagatgaa 320
Query: 121 tggcacctttagcaagtgtgagaaccttctcacctggagaaggattgggctccagctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcacctttagcaagtgtgagaaccttctcacctggagaaggattgggctccagctctt 380
Query: 181 atcagacccatgggagttcccagcctcaaggaccataacttaaaagcatggaagcacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagacccatgggagttcccagcctcaaggaccataacttaaaagcatggaagcacaag 440
Query: 241 ggtttggcatattgtttgagcactcgggaattagctggctacttctctgagcaccacact 300
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttg------------agcactcgggaattagctggctacttctctgagcaccacact 488
Query: 301 gctccagctgtctccaaaccctcagccagagcactgtgcaggagcaagggtcctccaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctccagctgtctccaaaccctcagccagagcactgtgcaggagcaagggtcctccaaga 548
Query: 361 tctccctccatcgccatgctgttagacaccttctctcccagagccgctcctttgaaggct 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 549 tctccctccatcgccatgctgttagacaccttctctcccagagccactcctttgaaggct 608
Query: 421 cagctcaatcttgtacgcctccacttcccttctccccagaggtctgcttccaacctacct 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 609 cagctcaatcttgtacgcctccacttcccttctccccagaggcctgcttccaacctacct 668
Query: 481 gaacaatagtggaattcaaatgattttgaaacctc 515
||||| |||||||||||||||||||||||||||||
Sbjct: 669 gaacagtagtggaattcaaatgattttgaaacctc 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
