Query= MSMg01no373_m19.b1 MSMg01no373_m19.b1 CHROMAT_FILE:
MSMg01no373_m19.b1 PHD_FILE: MSMg01no373_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:50 2005
(485 letters)
>mm_chr13_56458723_56459607
Length = 885
Score = 938 bits (485), Expect = 0.0
Identities = 485/485 (100%)
Strand = Plus / Minus
Query: 1 gtcctcagactggagccttctaaggcaacattcccttctctaagcagtacctcctcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtcctcagactggagccttctaaggcaacattcccttctctaagcagtacctcctcactt 528
Query: 61 actggcttcgatcctctctgtcttcagctcctacaccacccacttggggagtggagacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 actggcttcgatcctctctgtcttcagctcctacaccacccacttggggagtggagacta 468
Query: 121 gccagtcttccaggcacttctcagtccttccccaggctcttcacccaacttttgtaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gccagtcttccaggcacttctcagtccttccccaggctcttcacccaacttttgtaacat 408
Query: 181 aaacaatattgatgaattgtcatttctgtttaaacttgttgcaagtagatttgggagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaacaatattgatgaattgtcatttctgtttaaacttgttgcaagtagatttgggagcaa 348
Query: 241 ggtgagacctcttgtcctagattccagcgtgtttatttcaaatactctccataacacctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggtgagacctcttgtcctagattccagcgtgtttatttcaaatactctccataacacctt 288
Query: 301 ttcctgggacaggctggccctctaactctgtgccaaaaagcaaaagagaacagcaatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcctgggacaggctggccctctaactctgtgccaaaaagcaaaagagaacagcaatcag 228
Query: 361 ccaacagattagcaaactttttgcccagggctagagagatggctctgtggttaagaacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ccaacagattagcaaactttttgcccagggctagagagatggctctgtggttaagaacac 168
Query: 421 cgactgctcttgcagaggtcctgagttcaattcccagcaaccacatggtggctcataacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cgactgctcttgcagaggtcctgagttcaattcccagcaaccacatggtggctcataacc 108
Query: 481 atatg 485
|||||
Sbjct: 107 atatg 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_m19.g1 MSMg01no373_m19.g1 CHROMAT_FILE:
MSMg01no373_m19.g1 PHD_FILE: MSMg01no373_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:50 2005
(530 letters)
>mm_chr13_56271239_56272168
Length = 930
Score = 936 bits (484), Expect = 0.0
Identities = 519/531 (97%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 1 cacttcctgtttagattctcagcagttctcccgtgctgggctccaatcgcttcaa-ttac 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 201 cacttcctgtttagattctcagcagttctcccgtgctgggctccaatcgct-caaattaa 259
Query: 60 aattctttttgttgttgttgtttaatacttgaaactgggtttgtttgcctgacttggtcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aattctttttgttgttgttgtttaatacttgaaactgggtttgtttgcctgacttggtcc 319
Query: 120 tggatgattaaaaccctctaaacaaggatacgtaacagtgtccctgtttgagaccgactc 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 tggatgattaaaaccctctaaacaaggatatgtaacagtgtccctgtttgagaccgactc 379
Query: 180 tttggaagacttctagcaatcatgacatctgagcttgcagaaaagaaaaccagaaatgtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttggaagacttctagcaatcatgacatctgagcttgcagaaaagaaaaccagaaatgtc 439
Query: 240 aggcctgtttaatcactggcttcttgggtaacctctgcttttggagaccccctaccccca 299
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aggcctggctaagcactggcttcttgggtaacctctgcttttgaagaccccctaccccca 499
Query: 300 tcccctgtctccatagctttaagagaaggtagagcgaacatcctgggcaggtctccttcc 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcccccgtctccatagctttaagagaaggtagagcgaacatcctgggcaggtctccttcc 559
Query: 360 aggaggcagaaagctggactccaagtctggagcatgggggcttctctgtgctgatagtac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggaggcagaaagctggactccaagtctggagcatgggggcttctctgtgctgatagtac 619
Query: 420 gcagagggattaggaggagagagggagatcgtctgtttctctggagccagntccacacgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 gcagagggattaggaggagagagggagatcgtctgtttctctggagccaggtccacacgg 679
Query: 480 tgagttcctcggtccctcatggatgcgatcctgacttggtgtgccctttct 530
||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 680 tgagttcctcgttccctcatggatgcgatcctgactgggtgtgccctttct 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
