BAC Information

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BAC

Clone NameMSMg01-373O12
Chromosome13 (Build37)
Map Location 46,392,904 - 46,393,390
singlet/doubletsinglet
Overlap geneGm1574
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373O12.T7 (MSMg01no373_o12.b1)MSMg01-373O12.TJ (MSMg01no373_o12.g1)
ACCAG479826AG479827
length7111,561
length of high quality
(start - end)
488 (47 - 534)---
definitionCHROMAT_FILE: MSMg01no373_o12.b1 PHD_FILE: MSMg01no373_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:58 2005CHROMAT_FILE: MSMg01no373_o12.g1 PHD_FILE: MSMg01no373_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTTCAAGAGGATCCGCGGAATTCAGATTGTTTCATTGATTAGTC
TAAAATCTTCAGTAACAGCAATTGATTTCATAATATTCCATGTGTTACAA
ATGATTTTCACTTGGCTAGAGATTAACTTTGATTACTTTTTGATCTTATG
CCAAAGAGAGGTCATTAGCTGTTATTGAGCAACAATGCTTTGCTAGGCTC
TGCTATTGGTATTTGACAAGAGTATAAAAAAGTTCCCATATTAGATGAAT
GATTACTCAGCAGTTCAGGACAGTGAGAGTGACTTTCTAGTTACTTATCT
AGTTATGAAAAGTAAAATTGTAATAAAGGACTGCAAAGTTTTAACTTGCA
TCGTTCTCCAAATGTAGCATGCATTTACAATAGGAAATTCACAAATAATA
CGCGAACACCCTCCGAATCCTCTCCTCAATCACCCATATTCGACCCTCCA
ATAGGAACCTGGTTTCTAAATCCCTCCCTCCCTCCATTTCTCCTCTCCCC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTAACTTTTTT
ACCTTTCTCCGTCTTTTTATTTCATTCCTCATCTCTCCTCCTCACTTCCT
CCCTTCATCCTCTTAACTTCCATTATTCTTTTTACTTTATACCTATATCT
TCTTATTTCTCTTCTCCCTCTCTCCTCCTTTTCCTTCTTTCTTTTCTCTT
CTTCTCTCTCT
NCAATTCTACTAATTACCATATAAGTGTACACTAAATTTAATAACCTCAN
CNCTATATAATATCACATACATAAATAAATATTTCATAATCTACATCTTT
CATCCTCAATCATAANTGCTTTCGTTATACTCGAAATTTTTTTCATTATA
TATATATTATAATATCATAATACCCGCAAAACACTAACACTCACACATAC
AATTACATTCAATCCACCCCGCTTATACAACCTTATTTATTCTCTACACT
TATTCCATCACTCCTAATCTTCTTAATATATATTCAAATCATACTCACAT
CTCCTATAAACATTCCTATCTATATAAGCTTCTTCAATCATACACTACTC
CTACTCTGTCCCCTACCCACTCCTACACCGGCGCTCCCTTACTCCTCACT
ACTGCGCATATATAATACAAATCAACTACATACAATCTAGATTACATATA
AATANTTATTAAATTATAATCAATATATAAAATCATTAATAATTATAACA
ATNACATAATAAATACACCATATAATCAACTCAACCACACACAACATATT
CACACAATCTATTACATACATATAATAAATCACACTATTATCATATCATA
CAAATTATACATTACTTCTAAATCATTACATTTACTCAACTACAAATACT
GACCACATAATATATCAACAGCATTCATAATATACTCTAACAATACAATA
ATATATACACACACAACAATACAAATAGTATATTTAATACTAAACTATTA
CCTTCTATCATTTATAATCCAATCAATTACATTCTATCACTTCATTTATA
TATTAATATACTCAACTATACAGAATACACTACACTGGCAGAGACACGTA
CATAGTACATCCTCACTAATCCAACTATATATTATATTACATAATATCAT
TCTATCATACAACTACATACACAATCCTATTTCACGATACTAACTAAAAT
AAACATTATCACCACCAGCCCCAATACTANACACCATATATATTAATACA
CTCTTATATCATACGCACCGTCCAACTATACTCCCACTCACCTCATTGTA
CACNCACTACATACATATATATATATGCGCCAATATCTACAGATACACGC
TATACACCCACTCAATCATACACTCGTATACTTATCCTATTGCGTCTAGC
GGAGTCGCGGCGCCTCACGTGATTACATAGCCATACTCTCAATACTACTA
TANTCACATATCTATCACAAACGTATACATTACACACATATTAATACAAG
CTATATTCATACACAGCTCATCATACTACACCTCTCTNCTATCACAGTAA
TCACACATAATCCATCAAATAATAATNTAACATATGTCATACATCATCTA
TCACACGATATCATATCATATATATACACGTATACATCTCACCCCAAAAT
ATNANTCAAACTACTTTACCAACATAACACATATATATGTTAGCTCAACC
ACCTCTAAATNACTATTATATCTTNCTATACAACACTATAAATCATACAT
CTCNCACATATATCTCATATACTATACTANTACTACGCACAANATCTGCA
ATATCAACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_o12.b1 MSMg01no373_o12.b1 CHROMAT_FILE:
MSMg01no373_o12.b1 PHD_FILE: MSMg01no373_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:58 2005
         (488 letters)



>mm_chr13_46392737_46393624
          Length = 888

 Score =  851 bits (440), Expect = 0.0
 Identities = 476/488 (97%), Gaps = 2/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctaaaatcttcagtaacagcaattgatttcataatattccatgtgttacaaatgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtctaaaatcttcagtaacagcaattgatttcataatattccatgtgttacaaatgatt 595

                                                                       
Query: 61  ttcacttggctagagattaactttgattactttttgatcttatgccaaagagaggtcatt 120
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 594 ttcacttggctagagattagctttgattactttttgatcttatgccgaagagaggtcatt 535

                                                                       
Query: 121 agctgttattgagcaacaatgctttgctaggctctgctattggtatttgacaagagtata 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agctgttattgagcaacaacgctttgctaggctctgctattggtatttgacaagagtata 475

                                                                       
Query: 181 aaaaagttcccatattagatgaatgattactcagcagttcaggacagtgagagtgacttt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaaaagttcccattttagatgaatgattactcagcagttcaggacagtgagagtgacttt 415

                                                                       
Query: 241 ctagttacttatctagttatgaaaagtaaaattgtaataaaggactgcaaagttttaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctagttacttatctagttatgaaaagtaaaattgtaataaaggactgcaaagttttaact 355

                                                                       
Query: 301 tgcatcgttctccaaatgtagcatgcatttacaataggaaattcacaaataatacgcgaa 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 354 tgcatcgttctccaaatgtagcatgcatttacaataggaaatttaaaaataatacgcgaa 295

                                                                       
Query: 361 caccctccgaatcctctcctcaatca-cccatattcgaccctccaataggaacctggttt 419
           |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 294 caccctccgaatcctctcctcaatcacccca-atccgaccctccaataggaacctggttt 236

                                                                       
Query: 420 ctaaatccctccctccctccatttctcctctccccgtgtgtgtgtgtgtgtgtgtgtgtg 479
           ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 235 ctaaatctctccctccctacatttctccactccccgtgtgtgtgtgtgtgtgtgtgtgtg 176

                   
Query: 480 tgtgtgtg 487
           ||||||||
Sbjct: 175 tgtgtgtg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)