BAC Information

Click to search

BAC

Clone NameMSMg01-374C18
Chromosome13 (Build37)
Map Location 37,916,403 - 38,073,801
singlet/doubletdoublet
Overlap geneRreb1, Ssr1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneCage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374C18.T7 (MSMg01no374_c18.b1)MSMg01-374C18.TJ (MSMg01no374_c18.g1)
ACCAG480030AG480031
length800777
length of high quality
(start - end)		542 (46 - 587)422 (56 - 477)
definitionCHROMAT_FILE: MSMg01no374_c18.b1 PHD_FILE: MSMg01no374_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:19 2005CHROMAT_FILE: MSMg01no374_c18.g1 PHD_FILE: MSMg01no374_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,073,266 - 38,073,801)(37,916,403 - 37,916,824)
sequence
NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGC
GGAATTCAGGTCAGGTGCGATGGTAAATGCCCTAATTTCAGGACTAAAAA
GGCTGAGGCAGAGGAATCACATTTTGGGAGCCCTCCTGCGCTCTCCAAAA
CCAAACAATAGTGAACTGAAGTTAGCTTCCATGAACTCCTAGGTGAGGGG
TAGCCTGTGATGTTGTCTGAGGCAGGGAAGGAAGATGGATCTGAGTGTTG
GTAACACTAAACACCAGGAGAATCCCACTGTTGCAGTTTTCCCGAGGTGA
GATGGCTTGGTTGCTTAGCAGGTTGTAAATGGGTGGTGGAGGCACTCTGT
CTTGTTTTCTGGTATGTGATATGAGGGGTATTTTTCATTCATGATTCTTT
TTCTCCACCTAGAGTTTAAAGTTTTCTCTGGAAAAATAAAGCATTTTGAC
TTAGGTAGTTTGAGTTACATTTCTTCCTTAGGTTTTCGCCCACCCTGAAT
AGGCAGTAATGGTAAATGTTGGTCTTCCATAGCTGAGAAAGTCGTGACAC
ACATATGTGATTACTTTTTGTTTAAACACCATGCTTTTTTCTGCTGTTAA
GGTAGTTTTGAAACAATTTTTCCCCCCAAACAAAAGGCTGTAGAGGCTTA
AAGAATGGTCCTCGCCTGCCTGTTGGCTAACCCGAACCCATTGTTGAGAA
GGTTAACTTGAAACGGGTTCTTCTGATTGGATATTAACCACCGCTGTAGA
ACCCTCCCAAATAGAAAACCTTCCCTAAAAACCCCGGGTTGCGGATGGGG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTATCTTGGCCAGGCTTCATTTGTTCATTCTATCCTCAGATAGATA
CTTCTGTTGTCAGTTGCCACCTCTCCCCCACCCCTCAAACTTGAGTTCAT
TCGAAGGAAGACTTCAAATTAAAGCCCATAATAAGCTTTACAACTGTAGG
GTGTTCAGGCATTCCAAGAGGAGCCCATGGGGTGTAGCTAGGGCAAAGGT
CATAGCAAAGAGCGTGTAGTAAGCTTTCTGCATGTATAACATCAACCAAG
TAGTCCCAAGTGCATAACTCTATAGCCCTATTTTCTGTGCTTTTATCTTC
AGAATTGGTGTGAGTGTGTGTGAAGGTAACTATTCTGAAGATGTATCCAA
AACCGAGAACACGTCCCTTTTGGAACCTAAGTAGAAACTGGTTGGAGGTT
GGAAACATGTCAGCTGCTTTATGGAGGAAGCCAGCTGAGGCCTGGGTTCC
CTGGGCTCTGTGAAAACTTGGGACAAGGCATTGTGGTGGCTTCCGCAAAC
CCCGGGATTGTAGATAATATCTACCTACGTACCCTGGCTTTTCCCGGCTT
GATATGCACCCCTTTTTCTGTAAAAAAATATTTTCATGTTTTCTCCCTGC
CTACCCCCTCTATGTATTCTGTCGTAAACACCATCCCCTACTTTCTCTCT
CTTCGTACATGCAATTCCCGTGTTGCATCTCTTTATTTTTATTCGTCTCT
CCTTTTATTTACCTCCCTCTCCCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_c18.b1 MSMg01no374_c18.b1 CHROMAT_FILE:
MSMg01no374_c18.b1 PHD_FILE: MSMg01no374_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:19 2005
         (542 letters)



>mm_chr13_38073060_38074001
          Length = 942

 Score =  990 bits (512), Expect = 0.0
 Identities = 530/536 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaggtcaggtgcgatggtaaatgccctaatttcaggactaaaaaggctgaggcag 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcaggtcaggtgtgatggtaaatgccctaatttcaggactaaaaaggctgaggcag 683

                                                                       
Query: 67  aggaatcacattttgggagccctcctgcgctctccaaaaccaaacaatagtgaactgaag 126
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 682 aggaatcacattttgggagccctcctgggctctccaaaaccaaacaatagtgagctgaag 623

                                                                       
Query: 127 ttagcttccatgaactcctaggtgaggggtagcctgtgatgttgtctgaggcagggaagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttagcttccatgaactcctaggtgaggggtagcctgtgatgttgtctgaggcagggaagg 563

                                                                       
Query: 187 aagatggatctgagtgttggtaacactaaacaccaggagaatcccactgttgcagttttc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagatggatctgagtgttggtaacactaaacaccaggagaatcccactgttgcagttttc 503

                                                                       
Query: 247 ccgaggtgagatggcttggttgcttagcaggttgtaaatgggtggtggaggcactctgtc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccgaggtgagatggcttggttgcttagcaggttgtaaatgggtggtggaggcactctgtc 443

                                                                       
Query: 307 ttgttttctggtatgtgatatgaggggtatttttcattcatgattctttttctccaccta 366
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgttttctggtatatgatatgaggggtatttttcattcatgattctttttctccaccta 383

                                                                       
Query: 367 gagtttaaagttttctctggaaaaataaagcattttgacttaggtagtttgagttacatt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gagtttaaagttttctctggaaaaataaagcattttgacttaggtagtttgagttacatt 323

                                                                       
Query: 427 tcttccttaggttttcgcccaccctgaataggcagtaatggtaaatgttggtcttccata 486
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 tcttccttaggttttcgcccaccctgaataggcagtaatggtaaatgttcgtcttccata 263

                                                                   
Query: 487 gctgagaaagtcgtgacacacatatgtgattactttttgtttaaacaccatgcttt 542
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgagaaagtcgtgacacatatatgtgattactttttgtttaaacaccatgcttt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_c18.g1 MSMg01no374_c18.g1 CHROMAT_FILE:
MSMg01no374_c18.g1 PHD_FILE: MSMg01no374_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:19 2005
         (422 letters)



>mm_chr13_37916203_37917024
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcttggccaggcttcatttgttcattctatcctcagatagatacttctgttgtcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcttggccaggcttcatttgttcattctatcctcagatagatacttctgttgtcagtt 260

                                                                       
Query: 61  gccacctctcccccacccctcaaacttgagttcattcgaaggaagacttcaaattaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacctctcccccacccctcaaacttgagttcattcgaaggaagacttcaaattaaagc 320

                                                                       
Query: 121 ccataataagctttacaactgtagggtgttcaggcattccaagaggagcccatggggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ccataataagctttacaactgtagggtgttcaggcattccaagaggagcccatggggtgg 380

                                                                       
Query: 181 agctagggcaaaggtcatagcaaagagcgtgtagtaagctttctgcatgtataacatcaa 240
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 381 agctagggcaaaggtcatagcaaagagcatgtagcaagctttctgcatgtataacatcaa 440

                                                                       
Query: 241 ccaagtagtcccaagtgcataactctatagccctattttctgtgcttttatcttcagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagtagtcccaagtgcataactctatagccctattttctgtgcttttatcttcagaat 500

                                                                       
Query: 301 tggtgtgagtgtgtgtgaaggtaactattctgaagatgtatccaaaaccgagaacacgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgtgagtgtgtgtgaaggtaactattctgaagatgtatccaaaaccgagaacacgtc 560

                                                                       
Query: 361 ccttttggaacctaagtagaaactggttggaggttggaaacatgtcagctgctttatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttttggaacctaagtagaaactggttggaggttggaaacatgtcagctgctttatgga 620

             
Query: 421 gg 422
           ||
Sbjct: 621 gg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |