Query= MSMg01no374_k19.b1 MSMg01no374_k19.b1 CHROMAT_FILE:
MSMg01no374_k19.b1 PHD_FILE: MSMg01no374_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:59 2005
(472 letters)
>mm_chr13_93953452_93954323
Length = 872
Score = 779 bits (403), Expect = 0.0
Identities = 442/469 (94%), Gaps = 25/469 (5%)
Strand = Plus / Plus
Query: 5 gaattctatctagaccacgcttgctctacagagtaaattctaggaccaccagagctacaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gaattctatctagacca-gcttgctctacagagtaaattctaggaccaccagagctacaa 286
Query: 65 cgaaaccttgtctcaaaaaccccaccaccaccaccaccactaccaagtcattcattcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cgaaaccttgtctcaaaaaccccaccaccaccaccaccactaccaagtcattcattcatt 346
Query: 125 cattcattcattcattcattcattcattcaaaaaacaacaggatgcaagagactaacaaa 184
|||||||||| ||||||| ||||||||||||||||||||
Sbjct: 347 cattcattca--------------------aaaaaca---ggatgcaagagactaacaaa 383
Query: 185 tcaaatgttttgggttctaatcccaaattttgtaagtttaaaaaaaaaaa-tctgatcct 243
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tcaaatgttttaggttctaatcccaaattttgtaagtttaaaaaaaaaaaatctgatcct 443
Query: 244 gacaggtatactcatgacaggaaaatcagtgatatttagaaagaaaataaatgtagaaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacaggtatactcatgacaggaaaatcagtgatatttagaaagaaaataaatgtagaaaa 503
Query: 304 ttaggtactcctgatccttttaaatatattctttatatgaaacttcaagaggcaaaacaa 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 ttaggtactcctgatccttttaaatacattctttatatgaaacttcaagaggcaaaacaa 563
Query: 364 acaactgtattaaaattaccttatctttggcctcaggcagtgtgatttctcgaggttcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaactgtattaaaattaccttatctttggcctcaggcagtgtgatttctcgaggttcta 623
Query: 424 acagtggaatttctcgaagaggtggaacacatctgactatatctggtat 472
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acagtggaatttctcgaagaggtggaacacatctgactatatctggtat 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_k19.g1 MSMg01no374_k19.g1 CHROMAT_FILE:
MSMg01no374_k19.g1 PHD_FILE: MSMg01no374_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:59 2005
(494 letters)
>mm_chr13_94124667_94125560
Length = 894
Score = 540 bits (279), Expect = e-157
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 208 aagaggttgagtcaggaggacaacgtgctcaaggttggcccaagcagcgccgtgcgtgat 267
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 aagaggttgagtcaggaggacaacgtgctcaaggttggcccaagcggcgccgtgcgtgat 681
Query: 268 gcaggcagggtggaggcatgcatgagcagccccgctgctcctcactaggctctgcactaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcaggcagggtggaggcatgcatgagcagccccgctgctcctcactaggctctgcactaa 621
Query: 328 tcctaagaaagcaggaaatgaaatttctttagtttcatcctttttagctaaaccaaagca 387
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 tcctaagaaagcaggaaatgaaatttctttagtttcatcctttttagctaaaccgaagca 561
Query: 388 ggcgctttattacttaacattcacaaaggatctattctacttccttctttcatactgcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggcgctttattacttaacattcacaaaggatctattctacttccttctttcatactgcaa 501
Query: 448 taaagctgtcaatagctctcttttctgtatacaaatttgacaggaaa 494
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaagctgtcaatagctctcttttctgtatacaaatttgacaggaaa 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
