BAC Information

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BAC

Clone NameMSMg01-375B18
Chromosome13 (Build37)
Map Location 105,870,988 - 105,871,384
singlet/doubletsinglet
Overlap genenone
Upstream geneNln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp
Downstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375B18.T7 (MSMg01no375_b18.b1)MSMg01-375B18.TJ (MSMg01no375_b18.g1)
ACCAG480744AG480745
length781775
length of high quality
(start - end)
435 (49 - 483)397 (78 - 474)
definitionCHROMAT_FILE: MSMg01no375_b18.b1 PHD_FILE: MSMg01no375_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:35 2005CHROMAT_FILE: MSMg01no375_b18.g1 PHD_FILE: MSMg01no375_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTG
CATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGG
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTT
GGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTG
GAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCT
GGTCCTGCGCTTTTTTTGTTTGGGAAACCATTAAAAACTGCTTCTATTTC
TTTAAGTGGAAATGGACCTGTTATAATGCCCAATTTTATCCTGCATTCCA
TTTCGGTCACTGCTTTCTGTCTACTAAACTTTTCTCTTCTTTCCCCGTTT
TTCCTTTTCTCCTTCTCTATCATTTCTCTTTTCCTTTTTCTCCCATATTC
TCCTTTTATCTTTTCCATATTTCCTTTCCATTCCTTCTCTATCCCCCTTC
CCCTTTCTTTACTTTTCTTCTTCTTTCTCTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTATACCCATGTTTACAGTA
AGTTTATATGTTTATCCTTTTTTGTTGCCTGGCTTTGGAATTTTGCTTAT
ACAAACTTTACAAAATAGACTGGCCTGCTCTGTATAAATATTGTTGGCCT
TTAGTTTTACAGGAGGGAGTTTTAGCCACTACCCAATCTTTTAATTTCAT
TTATTTGTTCAAGTTTTATTTTTCTTATTTTTCAAAGTTGGCACTTTGTA
TTCTTGATGTATCCATTTAATCCAAGTTCAATTGAGCAAATGTCTGGCTG
GCAATATTCCAAGGGGTTGCAGCACTCTGGGGTACCTTATTGATCGCCTG
GATGAATTCCATCAGGCCACAATAACTGTGTAAAATGTAACTCAATAGAA
GCACTAGTTTTTTCACTTGCTCTGTTCTACCAAACAAGCAAGTCTACCAA
CAAACCAACAGGCCGTCCGAGTCCACAGAACTACTTTTCAGGGTCAGAAT
GTTATAATTAAGAAAGCTTCCAGTGAAAAATCTCGGGGTAAACCCAAAAC
CACTTGTGACTGCTCTCCCTTCTTACTCTCACCTCCCCCCTGGTTAAGTC
TTTTCTCCCCCTATTCAACTCCCTCACTTTCTCCACCCTATATCCCTTTC
CCCTCAACCTACACATCTCGTCTTTGCCCATATCTTCTCATTACCCCCTC
ACCTTACCTTCGATTCTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_b18.g1 MSMg01no375_b18.g1 CHROMAT_FILE:
MSMg01no375_b18.g1 PHD_FILE: MSMg01no375_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:35 2005
         (397 letters)



>mm_chr13_105870788_105871584
          Length = 797

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttatacccatgtttacagtaagtttatatgtttatccttttttgttgcctggctttg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tttttatacccatgtttacagtaagtttatatgtttatctttttttgttgcctggctttg 260

                                                                       
Query: 61  gaattttgcttatacaaactttacaaaatagactggcctgctctgtataaatattgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattttgcttatacaaactttacaaaatagactggcctgctctgtataaatattgttgg 320

                                                                       
Query: 121 cctttagttttacaggagggagttttagccactacccaatcttttaatttcatttatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttagttttacaggagggagttttagccactacccaatcttttaatttcatttatttg 380

                                                                       
Query: 181 ttcaagttttatttttcttatttttcaaagttggcactttgtattcttgatgtatccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaagttttatttttcttatttttcaaagttggcactttgtattcttgatgtatccatt 440

                                                                       
Query: 241 taatccaagttcaattgagcaaatgtctggctggcaatattccaaggggttgcagcactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatccaagttcaattgagcaaatgtctggctggcaatattccaaggggttgcagcactc 500

                                                                       
Query: 301 tggggtaccttattgatcgcctggatgaattccatcaggccacaataactgtgtaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggggtaccttattgatcgcctggatgaattccatcaggccacaataactgtgtaaaatg 560

                                                
Query: 361 taactcaatagaagcactagttttttcacttgctctg 397
           |||||||||||||||| ||||||||||||||||||||
Sbjct: 561 taactcaatagaagcattagttttttcacttgctctg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)