BAC Information

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BAC

Clone NameMSMg01-375N12
Chromosome13 (Build37)
Map Location 30,292,679 - 30,427,952
singlet/doubletdoublet
Overlap geneMboat1
Upstream geneCdkal1, E2f3
Downstream geneAgtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375N12.T7 (MSMg01no375_n12.b1)MSMg01-375N12.TJ (MSMg01no375_n12.g1)
ACCAG481301AG481302
length792774
length of high quality
(start - end)
451 (73 - 523)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no375_n12.b1 PHD_FILE: MSMg01no375_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005CHROMAT_FILE: MSMg01no375_n12.g1 PHD_FILE: MSMg01no375_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,292,679 - 30,293,129)(30,427,709 - 30,427,952)
sequence
NAAATTAGTTCTCATNTCAGCTATACGACTCACTATTTTCCAGAGGATCC
GCGGAATTCATGAGTTTCTCTAATGTGAGTCTCAGTACAATTTAATGTCA
GAATATTCATCTTCCCTGGTTTATGACATATGTTGGAAGTTAAAGCTTTT
GGATTTATGTCTCTATCTGTTGGATTGAAAATGGTAAGCGTATTCATCTC
TACAGTTGTCACTGGTGCCCTCCCTACCCCCAATCCATGTGTCAGGCTAA
GGGTTGAGATGCTCAAGATTCCAGTGAGTTTGGGAAGCAGACATTCATGT
GCATAATTTTAATTTGTTAGTGTTCTACATTAGCAGAATTCAAGCAGCTA
AGCAGTGACTTATGCTGGGCTTGGGGGACAGGTGTGATGTGATACGGAGG
ATGCTATAGAGAAGCAAGACCAATACAAAATGCATACACATCCAGACATG
ATGGTGTATGCCTTTAATCCCGGCGCTTGGGGGGCAGAGCCAGAGGCAAG
TCGATCTCTGTGAGTTCCAGGCCAATCTGGTTTACATAGAATGAGTTCCA
TGCCAGTTACAGTTACAGAGTTACAGGTTGAGATCCTGTGTATACACACT
CCCACTCTCATTCCCCCTTTCTCTCCCTTTTTACCTTCTCCCCTTCCTCC
CTAATCTCACTTTCTATCGCTTTTCCTCTCGCTTCATTTCACTCCTTTTT
TTACCTTTTTTTTCTTCCCTCTATTTCCCTTTCCCCTACCACTCCTATAT
TCCGCTTCCCCTTTTTTTTTCTTTCCTCTTATTTTATCTTTA
NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTCTTCGCTGTGGCTGACTCANAAT
TTGAGGTCTGTGCTGTGGATTACATATGGCATGGATTAATTTCAGAGTTG
TAAAATAAAAGATTATCAGTTCCTCCTAGTTTACACGTGGCTCAAGCTGC
ATTTATTTTAAAATAAAAACAGACTGCCAAAAAAATAGCACAAAATATTT
GAGAACAAAATGAACTCAATTCTAAATTAGAAAGAAAGAAAGAAAGAAAA
AAAGAAAGAAAGAAAGAATTATTTGTAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAAAAGGAAAGAAAAGAAA
GAGAGAAAGGCAAGGAAGGGAAGGGAAGGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGATAGGAAAGGAAAGGAAAGG
AAAGGATAGGATAGGAAAGGAAAGGAAAGGAAAGGATTGGAAAGGATAGG
CATGGCTCTTATCGTTCGGTTACGACTACATTGCACACTTTCGTTTCTCA
TTTCGACTTTTTTTCTTTTGCTCGTAATAGTACATCACTATCTAATCCTC
ACTTCACCATCTCCAAGCTAATTTCTTCTTTCTTTTCCATATTCTTTCTC
CCAGTCTTTACATTCTTCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_n12.b1 MSMg01no375_n12.b1 CHROMAT_FILE:
MSMg01no375_n12.b1 PHD_FILE: MSMg01no375_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
         (451 letters)



>mm_chr13_30292479_30293329
          Length = 851

 Score =  857 bits (443), Expect = 0.0
 Identities = 449/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgagtctcagtacaatttaatgtcagaatattcatcttccctggtttatgacatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgagtctcagtacaatttaatgtcagaatattcatcttccctggtttatgacatatg 260

                                                                       
Query: 61  ttggaagttaaagcttttggatttatgtctctatctgttggattgaaaatggtaagcgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaagttaaagcttttggatttatgtctctatctgttggattgaaaatggtaagcgta 320

                                                                       
Query: 121 ttcatctctacagttgtcactggtgccctccctacccccaatccatgtgtcaggctaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatctctacagttgtcactggtgccctccctacccccaatccatgtgtcaggctaagg 380

                                                                       
Query: 181 gttgagatgctcaagattccagtgagtttgggaagcagacattcatgtgcataattttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgagatgctcaagattccagtgagtttgggaagcagacattcatgtgcataattttaa 440

                                                                       
Query: 241 tttgttagtgttctacattagcagaattcaagcagctaagcagtgacttatgctgggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttagtgttctacattagcagaattcaagcagctaagcagtgacttatgctgggctt 500

                                                                       
Query: 301 gggggacaggtgtgatgtgatacggaggatgctatagagaagcaagaccaatacaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggggacaggtgtgatgtgatacggaggatgctatagagaagcaagaccaatacaaaatg 560

                                                                       
Query: 361 catacacatccagacatgatggtgtatgcctttaatcccggcgcttggggggcagagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 catacacatccagacatgatggtgtatgcctttaatcccggcgcttgggaggcagagcca 620

                                          
Query: 421 gaggcaagtcgatctctgtgagttccaggcc 451
           |||||||||| ||||||||||||||||||||
Sbjct: 621 gaggcaagtcaatctctgtgagttccaggcc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no375_n12.g1 MSMg01no375_n12.g1 CHROMAT_FILE:
MSMg01no375_n12.g1 PHD_FILE: MSMg01no375_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
         (244 letters)



>mm_chr13_30427548_30428191
          Length = 644

 Score =  458 bits (237), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcttcgctgtggctgactcanaatttgaggtctgtgctgtggattacatatggcatg 60
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 405 ctttcttcgctgtggctgactcaaaatttgaggcctgtgctgtggattacatatggcatg 346

                                                                       
Query: 61  gattaatttcagagttgtaaaataaaagattatcagttcctcctagtttacacgtggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gattaatttcagagttgtaaaataaaagattatcagttcctcctagtttacacgtggctc 286

                                                                       
Query: 121 aagctgcatttattttaaaataaaaacagactgccaaaaaaatagcacaaaatatttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagctgcatttattttaaaataaaaacagactgccaaaaaaatagcacaaaatatttgag 226

                                                                       
Query: 181 aacaaaatgaactcaattctaaattagaaagaaagaaagaaagaaaaaaagaaagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aacaaaatgaactcaattctaaattagaaagaaagaaagaaagaaaaaaagaaagaaaga 166

               
Query: 241 aaga 244
           ||||
Sbjct: 165 aaga 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)