Query= MSMg01no376_a17.b1 MSMg01no376_a17.b1 CHROMAT_FILE:
MSMg01no376_a17.b1 PHD_FILE: MSMg01no376_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
(532 letters)
>mm_chr13_117343856_117344782
Length = 927
Score = 907 bits (469), Expect = 0.0
Identities = 511/527 (96%), Gaps = 5/527 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgcagttaccagtaaatgcactctttaaatattagcaaaggcagataaaatta 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 205 gaattcatgcaggaaacagtaaatgcactctttaaatattagcaaaggcagataagataa 264
Query: 65 aatgaaaaaacataacgtgttataagaaacagaaactgactttgaccaactggtagaaaa 124
|||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 265 aatgaaaaaacataacttgttatgagaaacagaaactgactttgaccaattggtagaaaa 324
Query: 125 aaattaatggagaagttcaaggatttttctatttctttcctatttacttgtcttcccagt 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 aaattaatggagaagttcaaggatttttctatttctttcctatttatttgtcttcccagt 384
Query: 185 atgcattccatatagtattgagaccagaaaattattgtatgtgctcctcgcacagtgcag 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtattccatatagtattgagaccagaaaattattgtatgtgctcctcgcacagtgcag 444
Query: 245 aatcggtgcttattgggactttgtctagtctgttatgtgctacagactcatcacctagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcggtgcttattgggactttgtctagtctgttatgtgctacagactcatcacctagag 504
Query: 305 catccggggacacaggcagagctcagtgcttgtgagtaaaatgcatgataagagtaacac 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catccggg-acacaggcagagctcagtgcttgtgagtaaaatgcatgataagagtaacac 563
Query: 365 tcatggtctgtcttgagggacattgatgattccaaagaagatgcaacaaatgagataaaa 424
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcatggtct----tgaggggcattgatgattccaaagaagatgcaacaaatgagataaaa 619
Query: 425 gatacaatgaatttagaagaaagatattgattaaattgtgtctttaataattttcaaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatacaatgaatttagaagaaagatattgattaaattgtgtctttaataattttcaaact 679
Query: 485 tccttgattaaaaaagttctattctaacaatataaattatcttgaag 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccttgattaaaaaagttctattctaacaatataaattatcttgaag 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 927
Length adjustment: 10
Effective length of query: 522
Effective length of database: 917
Effective search space: 478674
Effective search space used: 478674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_a17.g1 MSMg01no376_a17.g1 CHROMAT_FILE:
MSMg01no376_a17.g1 PHD_FILE: MSMg01no376_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
(265 letters)
>mm_chr13_117501588_117502252
Length = 665
Score = 513 bits (265), Expect = e-150
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 1 aacacctcataaaaatatcttcaggcttctcagtaaagccatgtttgttctttgtgtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aacacctcataaaaatatcttcaggcttctcagtaaagccatgtttgttctttgtgtgtt 406
Query: 61 tggagtttgtactttctctgagtgcagaagatgtgttagcaagctaactgggattatgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tggagtttgtactttctctgagtgcagaagatgtgttagcaagctaactgggattatgcc 346
Query: 121 ctttacagaaaacgaaggctcctttgggaaaactatttgtccaaaaggagtcaatggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctttacagaaaacgaaggctcctttgggaaaactatttgtccaaaaggagtcaatggctt 286
Query: 181 tctggcttacagtccactgcttcttctagcccttctctcagtagtagctttgtgttaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctggcttacagtccactgcttcttctagcccttctctcagtagtagctttgtgttaagg 226
Query: 241 tcgttgttttattgatgttgaagtt 265
|||||||||||||||||||||||||
Sbjct: 225 tcgttgttttattgatgttgaagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
