BAC Information

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BAC

Clone NameMSMg01-376G10
Chromosome13 (Build37)
Map Location 61,478,515 - 61,478,881
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
Downstream geneCts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G10.T7 (MSMg01no376_g10.b1)MSMg01-376G10.TJ (MSMg01no376_g10.g1)
ACCAG481726AG481727
length758750
length of high quality
(start - end)		477 (44 - 520)495 (71 - 565)
definitionCHROMAT_FILE: MSMg01no376_g10.b1 PHD_FILE: MSMg01no376_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005CHROMAT_FILE: MSMg01no376_g10.g1 PHD_FILE: MSMg01no376_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGTATTACCGGGATAAAGCCACTAAACAATATTGATATATGATTC
ATTTTTCCAATGTTCAGCTTGCTGCCTGAAGCAACAGTCAGTAATGGGAA
TATATTTAAGAAAGGGCATTGGTTAGTAGAAATTTCCATTTAAAAAATTA
TCAGTGGGGCATATAATTCATTTATATTTTTAAAAAATCCCAGACACCAG
TAGGCATAGCTATCCCAGTGTGAGCATGAGAACTCTCTCATGTATAACTT
AGAAACAGCTAGTGGAATTTGAAAAAGACATGCCAGTTCTTCTTTCCAAG
CCCATGCTCCCAGAAATAAGACCCAGACTTAAAATATATTTACAAATACC
CTGGCCGTATAACCTAGACTCTTTTATGACTATATTATAACTTAACTACT
TATTCTAATATACATTCTGCCACGTGGCTGGTTACCTGTGCTAAGGTACC
ATGCTTCTGTATACATCTGTCCAAGTGAGTCTCTCAAGCCTGGGCCAGNT
GCAGAATTCTTTTTCCCTCCCAGATGTCCAACTTCTATTGTACCCTTTTC
TTCAGGGCATAAGTTTTTTTTAATTAGCAAGGGAATACATCCCTATAATA
ACAAGATAGCCTATAGGAATTCTTTTCACAAAGAATAAAATGTCTTTCCC
AAGGGAAACCCCTTGGACCCAAAACTCGGTGGGATTTTACCTCCCCCCCT
AAGAAATG

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAGAGACCTGGGATGATGAGAGGCTCCCA
GGAGTCAATGCAGGTGTCCTGAAGTGCCTAACAGTGGAGACATGGAACCT
AAAGAGGCTATCTCCTATAGCTAGGCAGAACTAAAAGTAAAGGGATAAAG
TCACCAACTGACTCACAAAACTTTTGACCCAATATTTGTTCTATCTAAAA
AAAAAAATACAGACACAAAGATGGAAGAGAGTCTGAAGGAACAGCCAACC
AATAATCTGCCAATTCAAACACATCCCTTGGCTAAGCACAATTCCCTGAT
GCTATTAATGATACTCTGCTATGCTTACCGATAGGAACCTAGCATAACTG
TCCTCTGAGAGACTCTACCCAACAGCTGACTGAAAAAGATGATGATAACC
ACATCCAAACACTGGAAAGAGGGCAGGGACCCTTATAGAAGAGTTAGGGG
AAGGATTAGAGGCCCTGAAGGGGACAGGAACCCCACATTGCGACCAACTG
TGTCAACTAACGTGGAACTCTGGGAGCTCTCAGAGACTGAGCCNCCAAAC
ATAGAGCATACAGAGACTGAGAAGAGGCCCCCCGCAATATGGAGCAAAAA
GCTGCTTTGTCTGGCCTCCATGGGAAAAAATGCAATAAACTTGCGGGAAA
TTTGAGGGGCCCCGGCTGGGCCAGGGAACCCAAGGGGCCCCCCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g10.b1 MSMg01no376_g10.b1 CHROMAT_FILE:
MSMg01no376_g10.b1 PHD_FILE: MSMg01no376_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:17 2005
         (477 letters)



>mm_chr13_61478515_61479391
          Length = 877

 Score =  671 bits (347), Expect = 0.0
 Identities = 362/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagtattaccgggataaagccactaaacaatattgatatatgattcatttttc 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattcacagtataaaagggataaagccactaaacaatattgatatatgattcatttttc 308

                                                                       
Query: 65  caatgttcagcttgctgcctgaagcaacagtcagtaatgggaatatatttaagaaagggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caatgttcagcttgctgcctgaagcaacagtcagtaatgggaatatatttaagaaagggc 248

                                                                       
Query: 125 attggttagtagaaatttccatttaaaaaattatcagtggggcatataattcatttatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attggttagtagaaatttccatttaaaaaattatcagtggggcatataattcatttatat 188

                                                                       
Query: 185 ttttaaaaaatcccagacaccagtaggcatagctatcccagtgtgagcatgagaactctc 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttttgaaaaatcccagacaccagtaggcatagctatcccagtgtgagcatgagaactctc 128

                                                                       
Query: 245 tcatgtataacttagaaacagctagtggaatttgaaaaagacatgccagttcttctttcc 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 127 tcatgtataacttagaaacagctagtggaatttgaaaaggacatgccagttcttctttcc 68

                                                                       
Query: 305 aagcccatgctcccagaaataagacccagacttaaaatatatttacaaataccctggccg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aagcccatgctcccagaaataagacccagacttaaaatatatttacaaataccctggccg 8

                  
Query: 365 tataacc 371
           |||||||
Sbjct: 7   tataacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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