BAC Information

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BAC

Clone NameMSMg01-376M13
Chromosome13 (Build37)
Map Location 108,856,089 - 108,976,052
singlet/doubletdoublet
Overlap geneNdufa12l, Ercc8
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik
Downstream geneLOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376M13.T7 (MSMg01no376_m13.b1)MSMg01-376M13.TJ (MSMg01no376_m13.g1)
ACCAG482019AG482020
length745748
length of high quality
(start - end)		481 (45 - 525)492 (72 - 563)
definitionCHROMAT_FILE: MSMg01no376_m13.b1 PHD_FILE: MSMg01no376_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:45 2005CHROMAT_FILE: MSMg01no376_m13.g1 PHD_FILE: MSMg01no376_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,975,742 - 108,976,052)(108,856,089 - 108,856,524)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGACAATAATCCAGTGTTTGGGTTACCACACCTAGCTTAATAGGC
AATGTTTGTTCACCTATTTATTTATTTATTTTATACACACACACACACAC
ACACACACACACACACACACACACACACACACACAATATTATATGTGTGT
GTGTGTGTGTGCATGTATGAATGTCTTGCCTGTATGCATGTATGTGAACC
ATGTATGTACATGATACCTCAGAGACCAGAAGAGGGCGTCAGATTGCCTG
AAACCAGAGTTAGGGACGCTTATGAACTGACATGTAAGTGCTAGGAAATG
AACCCAGGTCCCCTCTCTGTCAGAGTAGCAAATGCTTTTAACTGCTGAGT
CATCTCTCCAGCTCACCCTTGCTGTAATTTTAACTGAGTCTTAGCCCTCT
CTGCCTAGAAGCTTCTGCCTAGAAGAAAGTTGTACTTACAGTCAGAGCGT
CTTATTTAGAATTGTGGTTGTCTCAGAAGGACTGTTTTCTTTGACCCTTC
AGATGACCATGCACTGTTAACATCAACTTATAAGTTTGGGGTCAGTCATA
TTATATCTCTCGGACTTTANAAATTCTTTCTCACAAAAAAAAATCAACTA
CCATATTCTTATACTTGATAGCCCCAAAAAAAACTGGGTTCCCAATTTGC
GAAAGGACCCTTTTGAACCCCCTTGAATATGTTTAAAAAAAATTN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACGGGAGATGTGGGAGGGACTCCAAAC
AGTTGCTGGGGACCCGGAGAAGTGGCTCAGTGGGTAAGACTCTTGTCACA
CAAGCCTGGTGACCCAAGCTTTATCCCTGGAATCTATGTAAAGGTACAAG
GAGAACTGATCCACAAAGCTATCCTCTGCCCTCCACATGCATGTTAGGTC
AACATGTGCCTCTATCCTTTAACAACAGCAGCAATAACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACTCACTCACACTCTCTCACTCACACACCACAAATAAGAGCAGAAGAGAA
AAAACAAACGCAAATGAGGAACTCACCAGGAGATAAGTCCTTCACTACTC
TGAGCCAGGGACTGTTGTAGATGCTACAGATGCAGCAGCTCCAGACCACA
GAACCTGATCTTGAGGCTTAGACTCTAATAGACAGAGACAAAGCACAGCT
AGGGACTGAAGGTAAGCAGGTGACTGCAGTTGCTATGCCCTGATTTAATC
AGCCAGCCTGCCCTTTTGCTATCTAACAACTGGAAACTTAGAACTCTGCA
CAAAGTCCCTTTTGGTATCCTTTTCTCACAAGGAAAACGGCTTTTCCTCT
ACAAAATACTTCTCTAAACAAATAAAGGGATCTCAACCCAACCGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_m13.b1 MSMg01no376_m13.b1 CHROMAT_FILE:
MSMg01no376_m13.b1 PHD_FILE: MSMg01no376_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:45 2005
         (481 letters)



>mm_chr13_108975172_108976052
          Length = 881

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 171 gtatgaatgtcttgcctgtatgcatgtatgtgaaccatgtatgtacatgatacctcagag 230
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 881 gtatgaatgtcttgcctgtatgcatgtatgtgaaccatgtgtgtacatgatacctcagag 822

                                                                       
Query: 231 accagaagagggcgtcagattgcctgaaaccagagttagggacgcttatgaactgacatg 290
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 821 accagaagagggcgtcagattgcctgaaaccagagttagggacgcttaggaactgacatg 762

                                                                       
Query: 291 taagtgctaggaaatgaacccaggtcccctctctgtcagagtagcaaatgcttttaactg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 taagtgctaggaaatgaacccaggtcccctctctgtcagagtagcaaatgcttttaactg 702

                                                                       
Query: 351 ctgagtcatctctccagctcacccttgctgtaattttaactgagtcttagccctctctgc 410
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 701 ctgagtcatctctccagctcacccttgctgtaattttaactgaatcttagccctctctgc 642

                                                                       
Query: 411 ctagaagcttctgcctagaagaaagttgtacttacagtcagagcgtcttatttagaattg 470
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 641 ctagaagcttctgcctagaagaaagttgtacttacagccagagcgtcttatttagaattg 582

                      
Query: 471 tggttgtctca 481
           |||||||||||
Sbjct: 581 tggttgtctca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_m13.g1 MSMg01no376_m13.g1 CHROMAT_FILE:
MSMg01no376_m13.g1 PHD_FILE: MSMg01no376_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:45 2005
         (492 letters)



>mm_chr13_108855833_108856724
          Length = 892

 Score =  683 bits (353), Expect = 0.0
 Identities = 430/493 (87%), Gaps = 58/493 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacgggagatgtgggagggactccaaacagttgctggggacccggagaagtggctcagt 60
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcacaggagatgtgagagggactccaaacagttgctggggacccggagaagtggctcagt 316

                                                                       
Query: 61  gggtaagactcttgtcacacaagcctggtgacccaagctttatccctggaatctatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gggtaagactcttgtcacacaagcctggtgacccaagctttatccctggaatctatgtaa 376

                                                                       
Query: 121 aggtacaaggagaactgatcc-acaaagctatcctctgccctccacatgcatgttaggtc 179
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggtacaaggagaactgatcccacaaagctatcctctgccctccacatgcatgttaggtc 436

                                                                       
Query: 180 aacatgtgcctctatcctttaacaacagcagcaataacacacacacacacacacacacac 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacatgtgcctctatcctttagcaacagcagcaataacacacacacacacacacacacac 496

                                                                       
Query: 240 acacacacacacacacacacacacacacacacacacacacactcactcacactctctcac 299
           ||||||||||                                                  
Sbjct: 497 acacacacac-------------------------------------------------- 506

                                                                       
Query: 300 tcacacaccacaaataagagcagaagagaaaaaacaaacgcaaatgaggaactcaccagg 359
                  || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 -------ccgcaaataagagcagaagagaaaaaacaaacgcaaatgaggaactcaccagg 559

                                                                       
Query: 360 agataagtccttcactactctgagccagggactgttgtagatgctacagatgcagcagct 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agataagtccttcaatactctgagccagggactgttgtagatgctacagatgcagcagct 619

                                                                       
Query: 420 ccagaccacagaacctgatcttgaggcttagactctaatagacagagacaaagcacagct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccagaccacagaacctgatcttgaggcttagactctaatagacagagacaaagcacagct 679

                        
Query: 480 agggactgaaggt 492
           |||||||||||||
Sbjct: 680 agggactgaaggt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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