BAC Information

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BAC

Clone NameMSMg01-377C23
Chromosome13 (Build37)
Map Location 9,484,219 - 9,484,500
singlet/doubletsinglet
Overlap geneDip2c
Upstream geneAdarb2, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719
Downstream geneLOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377C23.T7 (MSMg01no377_c23.b1)MSMg01-377C23.TJ (MSMg01no377_c23.g1)
ACCAG482326AG482327
length790816
length of high quality
(start - end)		479 (44 - 522)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no377_c23.b1 PHD_FILE: MSMg01no377_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:17 2005CHROMAT_FILE: MSMg01no377_c23.g1 PHD_FILE: MSMg01no377_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTGCTGCCCTCAGTCTTTGATTAGTGTCTTAGTTACTGTTCTATT
GCTGTGAGAGACACCGTGACCTCAGTAACTCTTATAAAGAAAAACTTTTA
ATTGAGGCTTGCTTATAGGTTTAGAGGTTTGGTCCATTGTCATCATGGTG
AAAGGCAAGGCAGCAAGCAAGCAGACAGGTGTTGGAGAAATAGCAGAGAG
TTCTACATCCAGATCCACAGGAAGCAAGAAGAGAGACGTACTGGGTCTGA
TTTGGGCTTTTGAAACCCCCAAATCCCCACACATAACACACTTTCACCAA
CAAGGCCACACCTCCTGATTTGTCCTTATTCCCTCCCTGAGGACCAAACA
TTCAAATGTATGAGATTCTGTGGGCCATTCTTATTCAAACCACTAAATTA
GCATACTCAATTAGCATATTCTTTTTTTTTTCCTTTTTTTCTTTCTTTCT
TTAAAACCACCTGCCTCTGCCTCCGGAGTGTTGGGATGAAAGGCGTGAGC
CCCCCGCCCGGTTTGAGGGGTGGCTTCCAATTGTATTATTTGTAACCCCC
TGCAGAGAGCAGTGGTTTTTTGTGTATTCCACCAAATTTCTTTTTTCTCT
CCTCTTCCCCATATTCTTTTATTTCCCTTATCTCCCCATCACTTTTCCTT
TTTACCCCCTCCCTTTTCCCCTTTCCCTTCTCTCCTTTTATTCCTTCTTT
TCCCCCCCCTTTTTTTTTTTCCCTCCCCCCTTTTCTTTTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAATAAGCTATTTTAAAATACCATT
AGGGCTGATGGGGTTACAAAATGGTAGGCTCAGTTTGTCCTATCTTGCAC
TATTGATACACCAAACAGTAGTGATGCTTAGCTTAAGGTTCCTGAAGAAG
TTAGAACAAGAGGGGCTCTTTCATTCATTTTTTTCTTTTACTTACAGTGT
GTATGTATGCATGTGTGTTGTCTGTACATGTGTGTATGAGTGTGTATTTG
TGTCTCTGATCTATAAATGTGTATATGAGTGTTAGTGTATGTGGGTTTGT
CTGTGTGNAGGNCNNANATTGNCNGNGNCNTCTTCCTCTTTAGTTTATGA
TCTTACNTATCTACAGCTTTCAGACTCACCTAGTCTAAGTAGGCAGCTTT
GTCTGAGACTCTTATCATCCCCCTTTTTATCTCCAGTATTACCGGTGGTC
TCGCCTGTCTACAAAACAAACCCCTTTTCCCCTTGACTTTTGGTCTAACC
CTTTGTTCAAAGGACTTTTTTTAGCCCTTATAACTTCTGTTCGCCCCTTG
TTTATCTCCTCCATAATAGAGTTCTTTTTTCCTTCCCCCTTTTCCCCGCC
CCCATCATTTTTTTCTTTCTCCCACACTTTATCTCCTCCTCTTTTTTCTC
TACTTTATTTTTCCTCCCGCTTTCTTCCCCCCCCTCTCCTCTTCCTTTTC
TCCCCCCTCTTTTTTTTCTCCCTCTGTATTTNTTTTTTCCCACCCATCCT
CCCCCTATCAAGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_c23.g1 MSMg01no377_c23.g1 CHROMAT_FILE:
MSMg01no377_c23.g1 PHD_FILE: MSMg01no377_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:17 2005
         (282 letters)



>mm_chr13_9484130_9484811
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataagctattttaaaataccattagggctgatggggttacaaaatggtaggctcagtt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caataagctatttttaaataccattagggctgatggggttacaaaatggtaggctcagtt 312

                                                                       
Query: 61  tgtcctatcttgcactattgatacaccaaacagtagtgatgcttagcttaaggttcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtcctatcttgcactattgatacaccaaacagtagtgatgcttagcttaaggttcctga 252

                                                                       
Query: 121 agaagttagaacaagaggggctctttcattcatttttttcttttacttacagtgtgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaagttagaacaagaggggctctttcattcatttttttcttttacttacagtgtgtatg 192

                                                                       
Query: 181 tatgcatgtgtgttgtctgtacatgtgtgtatgagtgtgtatttgtgtctctgatctata 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tatgcgtgtgtgttgtctgtacatgtgtgtatgagtgtgtatttgtgtctctgatctata 132

                                                     
Query: 241 aatgtgtatatgagtgttagtgtatgtgggtttgtctgtgtg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aatgtgtatatgagtgttagtgtatgtgggtttgtctgtgtg 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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