BAC Information

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BAC

Clone NameMSMg01-377G05
Chromosome13 (Build37)
Map Location 30,884,949 - 31,065,815
singlet/doubletdoublet
Overlap geneExoc2, Hus1b
Upstream geneCdkal1, E2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4
Downstream geneEG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377G05.T7 (MSMg01no377_g05.b1)MSMg01-377G05.TJ (MSMg01no377_g05.g1)
ACCAG482481AG482482
length785790
length of high quality
(start - end)
249 (73 - 321)352 (78 - 429)
definitionCHROMAT_FILE: MSMg01no377_g05.b1 PHD_FILE: MSMg01no377_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:33 2005CHROMAT_FILE: MSMg01no377_g05.g1 PHD_FILE: MSMg01no377_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,884,949 - 30,885,197)(31,065,464 - 31,065,815)
sequence
CTCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCATGTTTCCTAGAGTCTGATTTTTGCAAAGAAGCCTAAAA
CCTATTGAAGTGGATCCTCATTTACAGCTGAGGAAAATAAGCTTCCCTAA
TTTGGGCCCTCATACCCAACAGGAACCAGTCCTATTTCCCAAGTGTCCCA
TACATGCCTGATTGGGAGGAACAAGGGTACAGGAAGGTGTGTGGCCAGGT
GGTTTCAAATGGGGACCAGGAAAGCACAGAGCGGCTGTTGCTAGTGCCCA
GGAAAGGGGCAGAGGCAAAGGATGTTTAATGGGCTGACTGGACTGGTACC
AAAGGTGGCTGTGGGTTGGGTCTCTGGGCCGAGATCCAACTTCCACTGTA
GAGGGTGCCCTGCCTGGTCAGGAGGTCATGGTAGAAAAGGGGGCAGTGAC
AGGCTACCTCAGTGTCAGCGATGACAGGATGACAGTCCTGGTAAAGCCCT
GGTTGCCTCTGACTTAAAAAAGGGATTGTCTTATCTGCGCTATAATTACC
CGCTCATTATTCTTATCCATTCTTCCCTTTGCGTTTTTTGCCCCCCTTCA
TGCCCTTTATTTTTTTTCATCTCCCTTTAACGCCCTACTCTCATCTTGCA
TTTTTCCCTCCTGTTTCTAATTTGCCCTATTTTCCCCCTCGCCTTATTCA
CCTTTTCCCTTACACACCTTTTATTTTCTCTCTCTTTTCTCCTCCCATTT
TTTTTTTTTCCCCTTCCCTCCCCTTATCCATTTTN
NCCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGTGGCACGGGACCGTCGGG
GCTGGGCGACCTGGGGAGGCGCGGTGAGGGACCCGGGGCGCGGGGCTGAG
TGTGGGAGCCGCGGGCCGAGCCTTCCCCACCCGCCTCCGCGCAGGCCGCC
GGGCTGGACCCGGAGGAGCGGCTGGTGTGCAGGGTCTGCTTGGAATCTGT
TTAAGTCCCCCGCGCTAACGTGGACGGGAAGCTTGAATGGTTTCCTTTAC
TACTCTGGGAGCAGCAAGTGCGGGTTCAGCCACACCTCCATTCGGCCATT
TGAATGCCTTACACTAAAAACACTAATGGCAACTGATTATCTCTCTACTA
ACTTTGTTTATAAAGCTTAGCTTGTGATGGCCCAGGCTTGGTAACAGATT
CCCCCAATGGCAAGGAACTGAAAGCCCAAACAAGAATGATCTACCCGTGA
ACCATTTGTGATTCCAAAGGTGACTCAAAGACCCTGAATGGCGCTTGGCC
CTTTACTGCCCTCTTTTTGTTGCCCCCGCAAACAATAATTTTTTAATCCC
GCCAACCCCCGGTTCTGTCGGATTATATTTTTTCGTGGTTATTAAAACCC
GCCACCCTCTCTCTTTTCCTTTTTTCCCACCCCATTACTACCCCCGCCCC
ATCCCCTTCCTTTCTTTCACCCCCCTCCTTTTATGATACACACCTCACAT
TACTCTCTCCCCTCCCCCTTCCCCCCCCACCCGTCGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_g05.b1 MSMg01no377_g05.b1 CHROMAT_FILE:
MSMg01no377_g05.b1 PHD_FILE: MSMg01no377_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:33 2005
         (249 letters)



>mm_chr13_30884749_30885397
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctgatttttgcaaagaagcctaaaacctattgaagtggatcctcatttacagctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgatttttgcaaagaagcctaaaacctattgaagtggatcctcatttacagctgag 260

                                                                       
Query: 61  gaaaataagcttccctaatttgggccctcatacccaacaggaaccagtcctatttcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaataagcttccctaatttgggccctcatacccaacaggaaccagtcctatttcccaa 320

                                                                       
Query: 121 gtgtcccatacatgcctgattgggaggaacaagggtacaggaaggtgtgtggccaggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtcccatacatgcctgattgggaggaacaagggtacaggaaggtgtgtggccaggtgg 380

                                                                       
Query: 181 tttcaaatggggaccaggaaagcacagagcggctgttgctagtgcccaggaaaggggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaatggggaccaggaaagcacagagcggctgttgctagtgcccaggaaaggggcag 440

                    
Query: 241 aggcaaagg 249
           |||||||||
Sbjct: 441 aggcaaagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no377_g05.g1 MSMg01no377_g05.g1 CHROMAT_FILE:
MSMg01no377_g05.g1 PHD_FILE: MSMg01no377_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:33 2005
         (352 letters)



>mm_chr13_31065264_31066015
          Length = 752

 Score =  673 bits (348), Expect = 0.0
 Identities = 351/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcggtggcacgggaccgtcggggctgggcgacctggggaggcgcggtgagggacccggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgcggtggcacgggaccgtcggggctgggcgacctggggaggcgcggtgagggacccggg 493

                                                                       
Query: 61  gcgcggggctgagtgtgggagccgcgggccgagccttccccacccgcctccgcgcaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gcgcggggctgagtgtgggagccgcgggccgagccttccccacccgcctccgcgcaggcc 433

                                                                       
Query: 121 gccgggctggacccggaggagcggctggtgtgcagggtctgcttggaatctgtttaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gccgggctggacccggaggagcggctggtgtgcagggtctgcttggaatctgtttaagtc 373

                                                                       
Query: 181 ccccgcgctaacgtggacgggaagcttgaatggtttcctttactactctgggagcagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccccgcgctaacgtggacgggaagcttgaatggtttcctttactactctgggagcagcaa 313

                                                                       
Query: 241 gtgcgggttcagccacacctccattcggccatttgaatgccttacactaaaaacactaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtgcgggttcagccacacctccattcggccatttgaatgccttacactaaaaacactaat 253

                                                               
Query: 301 ggcaactgattatctctctactaactttgtttataaagcttagcttgtgatg 352
           |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcaactggttatctctctactaactttgtttataaagcttagcttgtgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)