BAC Information

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BAC

Clone NameMSMg01-378F01
Chromosome13 (Build37)
Map Location 60,153,058 - 60,153,475
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378F01.T7 (MSMg01no378_f01.b1)MSMg01-378F01.TJ (MSMg01no378_f01.g1)
ACCAG483190AG483191
length806760
length of high quality
(start - end)
---542 (79 - 620)
definitionCHROMAT_FILE: MSMg01no378_f01.b1 PHD_FILE: MSMg01no378_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:46 2005CHROMAT_FILE: MSMg01no378_f01.g1 PHD_FILE: MSMg01no378_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCG
CGGAATTCTGTGAGCTTGCCGACATCCTGGGTACACACACACACACACAC
ACATACACACGGGNGGGGGAGGAGGAAGGGGGAGGGGTTGTGGTTTTTTA
TTTTTTTTTTTTATTTTTATGTTTCCGTTTTGGTTGGTTTTCATTTTGTC
TTTTTGTGTTAAAATTATTTTTTAATTTTTTTTTTTGATTCTCTGTTGTG
TGGGTGTTTTTTTTATATTTTTTGTTATTTTGTAGTTGTATTTTTTTTTT
CTTAGGGGATATGCAAGAAAAATCTTTTTTTTTTTGCTCCTTTTCTTTTT
TCTTCTTTCTGCCTTTCTTTTTTTCTCTTTTTTGTCTTTTTTAGTTTTCC
CCTTCTTTTTTTTTTTCTTTTCCCCCCCCTTCTTTTTTTTTTTTTTTTCT
TCTTTCCCTTTTTCTTCTTTTTACTTTTCCTTTCTCTTTCCCTCTCTTCC
GCCTCCTCTTTTTTTTTTTTTTTTCTTTTTCTTTTTTTTCTCTTTTTCTT
TTTATTCTCCCCTTTTCCTTCTTTTTTTTCTTCCCCCCTTTCTCTTTGCT
TTTTTTTTCTTTCTTCTTCTTTTTTTTCTCTTTTTTACCCTCCTTTTTTT
CCGTTTTTTCTTTTTTTTCTTCCTCTTTTCTTCCTTTTTTTCTTTTCCCC
CTCTTTTTTTCCTCTCTCTCTTCTCTTATTCTCCCTCTCTTTTTTTCTTT
TTCTCTTTCTTTTCTATTTCCCCCTTTTTTTTTCTCCTTTTTTTTTTTCA
CTTTTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCCAGGCCACTGCTTCCCA
AGCAGCTAAACCTGGAATGCAGCCCAGATGTTCCCAGTTGTGGGAGGGAG
GCCCAGGGTGGGAAAATTCAGGAGTCCCTTATGGATGGCAGCCACCTTGT
CTCAATGTCAACAAAACAAACAAATAACCCTGCCAGGCAAACGCAGTAGG
ATGGGTGGATGCTTTAAAGCTAACACTTACTTAAGAGCAGTATTTATTTA
TTCTTAGGTAATATCATACAAGCATACAAAGTAGCTTGATCATATTCACA
GGTAGCCTCCTGCCCAACCTCATTTCACATTTTTGGGGGCTCAGTTTCCT
CTTCAGAAACATGGGCATTAGAATAGCGAGGTTTTGCTGTGAGATTGTAG
ACACTGGGAGTGGTGCCACACACTTGCAATTTCAGCTCTCTGTAGCTCGA
GGCAGAAGGATCACAAGTTTGAGGGCGGCCTAAAATACAAGGTAATTCCC
TGTCTCAAAAAAAGGGGGCAAAAATCACAAAGACAAGGACCCTAACCTTC
TGAGGTAGGTCCATCTAATGCCATTTGCTGTCATTTTGCTGATAACAAGA
GGTTTGGGTATTTAAGTAACTTCTGAGGTCAGGCAGCCCCTAAGTAACCA
AGGGGCTTTGAATCCCTGGAAGGTGTGCTTCCGAATATATATTTATATAT
ATATCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_f01.g1 MSMg01no378_f01.g1 CHROMAT_FILE:
MSMg01no378_f01.g1 PHD_FILE: MSMg01no378_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
         (542 letters)



>mm_chr13_60153058_60153999
          Length = 942

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcccaggccactgcttcccaagcagctaaacctggaatgcagcccagatgttcccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgcccaggccactgcttcccaagcagctaaacctggaatgcagcccagatgttcccagt 359

                                                                       
Query: 61  tgtgggagggaggcccagggtgggaaaattcaggagtcccttatggatggcagccacctt 120
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 358 tgtgggagggaggaccagggtgggaaaattcaggagtcccttacggatggcagccacctt 299

                                                                       
Query: 121 gtctcaatgtcaacaaaacaaacaaataaccctgccaggcaaacgcagtaggatgggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 gtctcaatgtcaacaaaacaaacaaataaccctgccaggcaaatgcagtaggatgggtgg 239

                                                                       
Query: 181 atgctttaaagctaacacttacttaagagcagtatttatttattcttaggtaatatcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atgctttaaagctaacacttacttaagagcagtatttatttattcttaggtaatatcata 179

                                                                       
Query: 241 caagcatacaaagtagcttgatcatattcacaggtagcctcctgcccaacctcatttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caagcatacaaagtagcttgatcatattcacaggtagcctcctgcccaacctcatttcac 119

                                                                       
Query: 301 atttttgggggctcagtttcctcttcagaaacatgggcattagaatagcgaggttttgct 360
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 118 atttttgggggctcagtttcctcttcagaaacatgggcattaggatagtgaggttttgct 59

                                                                     
Query: 361 gtgagattgtagacactgggagtggtgccacacacttgcaatttcagctctctgtagc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gtgagattgtagacactgggagtggtgccacacacttgcaatttcagctctctgtagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)