BAC Information

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BAC

Clone NameMSMg01-378H02
Chromosome13 (Build37)
Map Location 60,102,303 - 60,102,800
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378H02.T7 (MSMg01no378_h02.b1)MSMg01-378H02.TJ (MSMg01no378_h02.g1)
ACCAG483288AG483289
length755757
length of high quality
(start - end)
627 (49 - 675)498 (80 - 577)
definitionCHROMAT_FILE: MSMg01no378_h02.b1 PHD_FILE: MSMg01no378_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:56 2005CHROMAT_FILE: MSMg01no378_h02.g1 PHD_FILE: MSMg01no378_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACAGAGGAATCTCAAGTGAAACACTTAAAGAAACCTTCA
ACATCCTTAGCCATCAGGGAAATACAAATCAAAATGACTCTGGAATTCCA
TCTTACACCTGTTGGAATGGCTAAGATCAGAAACACAAGTGATAGCAGAT
GCTGGTAAGGACGTGGAGCAAGGGGAACACTCCTCCATTGCTGGTGGGAG
TGTAAACTTGTATAGCCACTATGGAAATCAATGTGGTTGTTCCTCAGAAA
CTTAGTTATCTATCTACCTCAAGACACAGCTACACTACTCTTGAGCATAT
ACCCAAAGAACACTCTATACTACCATAAGGACACTTGCTCAGATATATTC
ATATCAACTTTATTCATAATAGTCACAAACTATAAAGAACCTACTTAGAT
GTCCCTCAGCAGAAGAATGGATAAAGAAATTATGGTATAACTACACAATG
GAGTATTATCCTGTGGTTAAAAACAATAACATCATGAAATTTGCAGGCAA
ACAGATGGTGAGGTAACCCAGACCCAGAAAGACAAATTTAGTATGTATGG
ACATTATCTGTTAAGTAAAGGAAAGCCATGCTATGATCCACAGACCCAGA
GAGACTGAGTACCAGAGAGGGCTCAAGGTGTAACCCATGTGTCTCCCCAC
GAAGGGAAAATAGAGTAGATTTTGTGGGTGCACTGGGCATGGCAAGGAAT
GGAAN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGAGGGAATCCCTCGCTC
ATTTTGTCTGTGTGCAAACTCAGGGGCAAAAGATATGTATTAGTGTGAAT
TTTGTAAATTCTGCCAAATTCCTTCTAGAAGACTTTTTATCAATTTATAA
CCTTCCACCAATGCATGAGAGGTCTGTTTCCCATCTCTGCCAACCATAAG
ATTTGGAGTCCTTTGATCTCTGCCAGATTAGTCAGTGAGCTATGCCAGCA
TGATGCAATTAGCGTTTCCCTTATTAGGAGGGATGTCTTTTCATGTGTTT
GAAGACAATTTGCATTTCCTTTTTTTATGAACCATCTGTATATATTGTTG
CCGGCAGTTTTGTGCTAGAATATTTAATATATGAAAGTCATTTTTGACAG
CATACTTTGTAATAAAAGATGAAAATTGACTTCATATGCACATTTTCTAG
CTTCTCACACACCAGTTTGTTTTGTTCGTGGTATTTTGTCTTCCAAAATA
ATAATAATAAAAAGTAAACATACACACTCACACACACACTCATTCACTCT
TACAGCCAAAAANAAATTTGTTTTCTTGGCCTCCGTGGGTTTCCCAGGCC
CAAATATATTTTTCTCTACTCCTGGGTTGTGGAGAACCCCTCCTTGTGTT
CCCATTTTTCTCTGGCCCCGCCTTCTCTCTTGTTTTTCGTTTCCCCCTCC
ATCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_h02.g1 MSMg01no378_h02.g1 CHROMAT_FILE:
MSMg01no378_h02.g1 PHD_FILE: MSMg01no378_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:56 2005
         (498 letters)



>mm_chr13_60102103_60103000
          Length = 898

 Score =  948 bits (490), Expect = 0.0
 Identities = 496/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagagggaatccctcgctcattttgtctgtgtgcaaactcaggggcaaaagatatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagagggaatccctcgctcattttgtctgtgtgcaaactcaggggcaaaagatatgta 260

                                                                       
Query: 61  ttagtgtgaattttgtaaattctgccaaattccttctagaagactttttatcaatttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtgtgaattttgtaaattctgccaaattccttctagaagactttttatcaatttata 320

                                                                       
Query: 121 accttccaccaatgcatgagaggtctgtttcccatctctgccaaccataagatttggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttccaccaatgcatgagaggtctgtttcccatctctgccaaccataagatttggagt 380

                                                                       
Query: 181 cctttgatctctgccagattagtcagtgagctatgccagcatgatgcaattagcgtttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgatctctgccagattagtcagtgagctatgccagcatgatgcaattagcgtttcc 440

                                                                       
Query: 241 cttattaggagggatgtcttttcatgtgtttgaagacaatttgcatttcctttttttatg 300
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttattaggcgggacgtcttttcatgtgtttgaagacaatttgcatttcctttttttatg 500

                                                                       
Query: 301 aaccatctgtatatattgttgccggcagttttgtgctagaatatttaatatatgaaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccatctgtatatattgttgccggcagttttgtgctagaatatttaatatatgaaagtc 560

                                                                       
Query: 361 atttttgacagcatactttgtaataaaagatgaaaattgacttcatatgcacattttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttttgacagcatactttgtaataaaagatgaaaattgacttcatatgcacattttcta 620

                                                                       
Query: 421 gcttctcacacaccagtttgttttgttcgtggtattttgtcttccaaaataataataata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttctcacacaccagtttgttttgttcgtggtattttgtcttccaaaataataataata 680

                             
Query: 481 aaaagtaaacatacacac 498
           ||||||||||||||||||
Sbjct: 681 aaaagtaaacatacacac 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)