BAC Information

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BAC

Clone NameMSMg01-379B21
Chromosome13 (Build37)
Map Location 4,526,395 - 4,526,790
singlet/doubletsinglet
Overlap genenone
Upstream geneGdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20
Downstream geneAkr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379B21.T7 (MSMg01no379_b21.b1)MSMg01-379B21.TJ (MSMg01no379_b21.g1)
ACCAG483806AG483807
length782773
length of high quality
(start - end)		479 (39 - 517)396 (73 - 468)
definitionCHROMAT_FILE: MSMg01no379_b21.b1 PHD_FILE: MSMg01no379_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:47 2005CHROMAT_FILE: MSMg01no379_b21.g1 PHD_FILE: MSMg01no379_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CTCTGTTACCTGGTATCAGTCTAGAAATTTGTCTATTTCATCCAGGTTTT
CCACTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGG
ATTTCTTCAGGATCTGTTGTCATGTCTCCCTTTTCATTTCTGATTTTGTT
AATTAGGATGGTGACCCTGTGTGCTCTAGTGAGTCTGGCAAAGGGTTTAT
CTATCTTGTTGATTTTCTCAAAGAAACACCTCATTTGGTTGATTCTTTGA
ATACTTCTTGTTTCAACTTTGTTGATTTTTCCCCTGAGTTTGATTATTTC
CTGTGATCTACTCCTCTTGGATGAATTTGCTTCCTTTTGTTCTAGAGCTT
TTAGGTGTGTTGTCAAGCTGCTAGTGTGAGCTCTCTCTAGTTTCTTTCTG
GAGGCACTCAGAGCTTTGATTTTCCTCTTAGAAATGCTTTCATTGTGTCC
TATAATTTTGGGTATGTTGTGGCTTCATTTTCATTAACCTCTAAAGAGNC
TTTAATTTCCATCTTTAATCCTTCCCTGACCCAGGGAACATTGAGAATAA
ATGTTGTTCAGTTTCCCCATAAATGGTGGCTTTCCATTATTTATGGTGGT
ATTGAAAAACCCAACTAATCCTCTGGGGATTCTGTCTAAAGGCTTGCGAC
CAATTCCCTAAACCTTGTATTCTGTTGAGAACCCGTTCTTTGTTTCCATT
CTTTTACCTTTTTTTTTATAAAAACCCTGATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGGTAGGGAAACTGGAGTTGGTGGGTGGG
TTTGAGAACACCTTCATAGAAGCAGGAAGAGGAACCATGAAATCTGTTAG
CATCTGCTTTCAAAATTCTTTGTTTGTGTTCTACGTTATTTTTACCTTGT
ATCCAGAGGACTAAAGATTAGCCCTGGCATTCTGAAATTCACTAAAATAG
TATGTCACAATAGGTGGTAGTGGTCTTCGTTTTCTCTGTTAGTAAGCTGT
TAAAGAATGGCTGAAGATATCGTTGAACGTACAGTGTTTAAATCCTGCTT
TAGTTCATGTGGCCAAGTCTCTTTGATTGTCAGGGATTCATTGTCTAGCA
ATGTTAGTGCTCACTGCCCTTTTCCTTTAGTGTTGAACCCAAACCATCCT
TGCCTTAAAAGTTATGGGATAACGGGTTCATATCAGCAGCAATCACCAAC
TGAACAATGTGATCTACTTAGCGGTGATTGCATTTGGCCTTGATCCTCCC
CAATGCGTTTCATTTGCCTTCCTGTTGCCAATGCTTCCCTTTCTCCCATT
TTTCTTTTTCATTTTTTGTTTCTCACCCGAACTAATCAACCCTTCCTTCT
TCCCCCTTTTTTTCTCCGTTTCCACCTCTTCCCGGCTCTCTTTTTTTTCT
TCCCTCTCTTTCCATTTACCCCCTCCTTCCCCTTTCCTTTCCTCCCTTTT
CCCTCCCCCCCCCTCCCGCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_b21.g1 MSMg01no379_b21.g1 CHROMAT_FILE:
MSMg01no379_b21.g1 PHD_FILE: MSMg01no379_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:47 2005
         (396 letters)



>mm_chr13_4526135_4526930
          Length = 796

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%), Gaps = 2/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtagggaa-actggagttggtgggtgggtttgagaacaccttcatagaagcaggaagag 59
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ggta-ggaagactggagttggtgggtgggtttgagaacaccttcatagaagcaggaagag 598

                                                                       
Query: 60  gaaccatgaaatctgttagcatctgctttcaaaattctttgtttgtgttctacgttattt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaaccatgaaatctgttagcatctgctttcaaaattctttgtttgtgttctacgttattt 538

                                                                       
Query: 120 ttaccttgtatccagaggactaaagattagccctggcattctgaaattcactaaaatagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttaccttgtatccagaggactaaagattagccctggcattctgaaattcactaaaatagt 478

                                                                       
Query: 180 atgtcacaataggtggtagtggtcttcgttttctctgttagtaagctgttaaagaatggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atgtcacaataggtggtagtggtcttcgttttctctgttagtaagctgttaaagaatggc 418

                                                                       
Query: 240 tgaagatatcgttgaacgtacagtgtttaaatcctgctttagttcatgtggccaagtctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgaagatatcgttgaacgtacagtgtttaaatcctgctttagttcatgtggccaagtctc 358

                                                                       
Query: 300 tttgattgtcagggattcattgtctagcaatgttagtgctcactgcccttttcctttagt 359
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 357 tttgattgtcagggattcattgtctagcaatgttagtgctcgctgcccttttccttcagt 298

                                                
Query: 360 gttgaacccaaaccatccttgccttaaaagttatggg 396
           |||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttgaacccaaaccatccttgccttaaaagttatggg 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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