BAC Information

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BAC

Clone NameMSMg01-379K04
Chromosome13 (Build37)
Map Location 20,384,501 - 20,384,973
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneTcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379K04.T7 (MSMg01no379_k04.b1)MSMg01-379K04.TJ (MSMg01no379_k04.g1)
ACCAG484200AG484201
length748750
length of high quality
(start - end)		478 (40 - 517)319 (71 - 389)
definitionCHROMAT_FILE: MSMg01no379_k04.b1 PHD_FILE: MSMg01no379_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:27 2005CHROMAT_FILE: MSMg01no379_k04.g1 PHD_FILE: MSMg01no379_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTCTGTATCCTGCAAGGCAAACACCATCCTGCCTGTCAAAATCTGAACTT
GGAAGAACACTGAGAAGCTTGGATAAAATTTGATTTCTTTGAATAAAGGT
TGAATTTATAGAAAGAATATAATTTCTTATTTCGTTTCTCCCAAGTAGAC
AGAGCCCAGGAAGCAGTAAGTTGATAGTTTCTTAGAGTCCATGCAGGCCA
CATTTCAGCTTCTATTTCCCTGCTTCCAAGCCATGGGCTAAGAAACCTGT
CTTTTAATATATCTATGATTGGTTTCCTTGGCTGCAAACTGGTCACAGCT
TTTTGTTTCAAATTTACCAAAGCAGACAGAGATCTTAGCCACCCTGGAGC
CCTCCTTCATTTTAGGAAGTACGTGTCTTGGAAACCACAGGCAGAGTTTT
GAGTTCAGAGTTCTCCAGAGGAACAGAGTAGTCCGTGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGCGCGTTTTTCGCCTTTCTTTTTTCCT
TTTTCTTCTTTCTCCCTTTTTTCCCCCTTTCCCTTTTTTTCCTCTTCTCT
CTTTTCTCTTTTTTTTCCCCTTTCCCTTCCTTCTGCCTTCCCCTTGCGCT
TTTTTTTATCTTTTGTTTGCTCCCCTTTTCTTTCCTTTCCTACTTTGTTC
CCTACCCCCCTTTTCTCTTTTACCCTCTTTCTTCCACCTCCCATTTTT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGAAAACTAAAGATAAATGTACCATATG
ACTCACCCAGCTAGACCACCCCAAGGCATATGCCCAAAGGACTCAGCAGC
CCACTCCACAGATGCTCACATGGCTGTGTTCATTACTCGCAATAGCTAGG
AAAGGAAGACAACCCAAATGTCCTTTACCAGGTGAATGGATAATGAAAGT
GAGATGCATACACAAAACAGACTACCACCCAGCTTTAAGGAAAACTGGAG
ACTACACTTTTAGATGACTTCCCTTGGATCTGACCTGAAAGCCTCTTTCT
TGCAGTCTAGCTTGCCAAGAGGCGGGGGGGGGGGGGGNNANNNNNTNNNN
NNNNNNNNNNNNNNTNNNTGNNNNNNNNNNNGNNNNNNTTTTTTTTTTTT
TNTTTTTTGTTTTTTGGTTGTGTTGTTTTTTGTTTCTTTTTTTTTTTTTT
GTTTTGTTGTTGTGTGTTTTTTGTTTTTTTTTTTTTTTTTGTCTTTTTTT
TTTTTTTTTTTTGCTCCTTTCCCTCCGCTCCTCCCTCCCCCGTTTTTCCC
TTCCCTTTTCTTTCCTTCCCCCCCCCCTCTTTTCCTTTCCCGCCCTTTTT
CCTTCCCTCCCCTTTTTTTTTTCTTTTTCTCTCCCCTTTTCCCCCCCTTT
CCCTTTTCCCCCCCCCCCCGCCTTTTTTTCCCTTCTTTTTCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_k04.b1 MSMg01no379_k04.b1 CHROMAT_FILE:
MSMg01no379_k04.b1 PHD_FILE: MSMg01no379_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:27 2005
         (478 letters)



>mm_chr13_20384297_20385173
          Length = 877

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgtatcctgcaaggcaaacaccatcctgcctgtcaaaatctgaacttgga 64
           |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctttctg-agcctgcaaggcaaacaccatcctgcctgtctaaatctgaacttgga 263

                                                                       
Query: 65  agaacactgagaagcttggataaaatttgatttctttgaataaaggttgaatttatagaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaacactgagaagtttggataaaatttgatttctttgaataaaggttgaatttatagaa 323

                                                                       
Query: 125 agaatataatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaatataatttcttatttcgtttctcccaagtagacagagcccaggaagcagtaagttg 383

                                                                       
Query: 185 atagtttcttagagtccatgcaggccacatttcagcttctatttccctgcttccaagcca 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 atagtttcttagagtccatgcaggccacatttcaccttctatttccctgcttccaagcca 443

                                                                       
Query: 245 tgggctaagaaacctgtcttttaatatatctatgattggtttccttggctgcaaactggt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 444 tgggctaagaaacctgtcttttaatatatctgtgattggtttccttggccgcaaactggt 503

                                                                       
Query: 305 cacagctttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacagctttttgtttcaaatttaccaaagcagacagagatcttagccaccctggagccct 563

                                                                       
Query: 365 ccttcattttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttcattttaggaagtacgtgtcttggaaaccacaggcagagttttgagttcagagttc 623

                                                                 
Query: 425 tccagaggaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 478
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcagaggaacagagtagtccgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space:   405756
Effective search space used:   405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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