BAC Information

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BAC

Clone NameMSMg01-380D06
Chromosome13 (Build37)
Map Location 85,600,062 - 85,600,527
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D06.T7 (MSMg01no380_d06.b1)MSMg01-380D06.TJ (MSMg01no380_d06.g1)
ACCAG484635AG484636
length806760
length of high quality
(start - end)
343 (34 - 376)467 (68 - 534)
definitionCHROMAT_FILE: MSMg01no380_d06.b1 PHD_FILE: MSMg01no380_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:12 2005CHROMAT_FILE: MSMg01no380_d06.g1 PHD_FILE: MSMg01no380_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTCCCA
CTTTCTCTTGTGTGAGGTACAATGTGTACTTGAACTTTAGTAAAGTTTCT
TTTGTGAATGTGGGTGCCCTTGCACTTGGAGCATAGAAGCTCAGAATTGA
GAGATTTTCTTGGTAGATCTTTCCTTTTATGAGTACGGAGTGCTTTTCCT
TATCCTTTTTGATAACTTTTGGTTGAAAGTTGATTTTATTTGATATTAGA
ATGGCTACTCCAGCTTATTTATTGGGAACATTCTCTTGGAAAATTGTTTT
CCTGCCCTTTGCTCTGAGGTAGTGTCCATCTTTGACACTGAGGTTCATTT
CCTGTATGCAGCAAAATGTTGGGTCCTGTTTTATGTATCCGTTCTGTTAG
CCTACATCTTTTTATTGGTTAATTGAGGCTGTTGATGTCTATAGATACCC
AGGAATAGTGATTGTTGTTTCCTGTTATTTTTTATGTCCTCTCCACTACC
TCCTCTGTTCCTCCCATTTCGCACTTTTTCCTTCCTTGCGCTTTTATCCG
CCCTTCATTATTCTCTTTTCATACCTCGTACTTTTCCTTTCCTCCTGCTT
TACCTTTCGTATTTCCCCTCCTTAATCTCCCTGCCTATTTCTATCCTCAT
TTCTATTGTTCACCCTCGCTCTCCCTCTCCCTTCATTTTTCCCTTCTTTT
CTTTTCGCCTTCTCTCGCCCCCTTTCATCTCTTTCTTTTTTTTCCCTCCC
TCTACTCTCCTGTTCACCCTTCCTTCTCATTGCTACACTTTCCTTCTTTT
TCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAATTTAAACTACTACCCAGAATGCCTTCTCA
CCTATAAGGGCAGAAAGACATGTCTAAGTCATTGACTTACAAACACGAAT
AGGGAACCCTTAAAACAGATCTCCCAGGACAGTCCAGTTCGAAGAAGACA
TGTCATTGCAACACAGAAGAAACAATGTCCAAAGGCAAACAAAGGCATAG
TGCCTTCTATTGCATGCTACTGCTTATCATACCTTTTAGTTGGGTTTTTT
TTCTCTTTTTTTTTTCTTATAATTTAAAATTTGGACTTTCTTATGCTACT
GTTTTTCTAGCTTGTAGCTCCCTGGAGGTATTTTATAGCTATTTCTTTTC
TACAAAATGTTACTCTCAGACTGCCATCATACTAATATTTTACCTCCTGT
TTTCTGTATTACTTGTTATTTAACTACTTAAATATTTATAACCTTATCTC
TCAAAATGAAATTTATAAAATATGCTTTCCCAATCATTGGCCAAGCAAAA
GTGTCTCTGAACTTTATCAAGGACACAAGTTGAGTTCACAAGTCTCTCCT
ACTATGCTGATAAAATAACTTGGGGGGAAAAGTGAGCATTTTATCAATAA
ATAGCAGCTACCCCCCCAAAAAATTTCCCTATAATTAACGTCCACAAATA
GAATTTGACTCACGGCGAATAAGAAAATGTTATACACTATGGGATGCTCT
AACTGAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d06.g1 MSMg01no380_d06.g1 CHROMAT_FILE:
MSMg01no380_d06.g1 PHD_FILE: MSMg01no380_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:12 2005
         (467 letters)



>mm_chr13_85599862_85600727
          Length = 866

 Score =  818 bits (423), Expect = 0.0
 Identities = 456/469 (97%), Gaps = 5/469 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatttaaactactacccagaatgccttctcacctataagggcagaaagacatgtctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agaatttaaactactacccagaatgccttctcacctataagggcagaaagacatgtctaa 607

                                                                       
Query: 61  gtcattgacttacaaacacgaatagggaacccttaaaacagatctcccaggacagtccag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtcattgacttacaaacatgaatagggaacccttaaaacagatctcccaggacagtccag 547

                                                                       
Query: 121 ttcgaagaagacatgtcattgcaacacagaagaaacaatgtccaaaggcaaacaaaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttcgaagaagacatgtcattgcaacacagaagaaacaatgtccaaaggcaaacaaaggca 487

                                                                       
Query: 181 tagtgccttctattgcatgctactgcttatcataccttttagttgggttttttttctct- 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 486 tagtgccttctattgcatgctactgcttatcataccttttagttaggttttttttttctc 427

                                                                       
Query: 240 -tttttttttcttataatttaaaatttggactttcttatgctactgtttttctagcttgt 298
            ||||||   |||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 426 atttttt---cttataatttaaaatttggactttattatgctactgtgtttctagcttgt 370

                                                                       
Query: 299 agctccctggaggtattttatagctatttcttttctacaaaatgttactctcagactgcc 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 agctccctggaggtattttatagctatttcttttctacaaaatgttactctccgactgcc 310

                                                                       
Query: 359 atcatactaatattttacctcctgttttctgtattacttgttatttaactacttaaatat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcatactaatattttacctcctgttttctgtattacttgttatttaactacttaaatat 250

                                                            
Query: 419 ttataaccttatctctcaaaatgaaatttataaaatatgctttcccaat 467
            ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 ctataaccttatctctcaaaatgaaatttataaaatgtgctttcccaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space:   391192
Effective search space used:   391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)