BAC Information

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BAC

Clone NameMSMg01-380E17
Chromosome13 (Build37)
Map Location 36,630,014 - 36,630,512
singlet/doubletsinglet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E17.T7 (MSMg01no380_e17.b1)MSMg01-380E17.TJ (MSMg01no380_e17.g1)
ACCAG484704AG484705
length776779
length of high quality
(start - end)		503 (60 - 562)315 (70 - 384)
definitionCHROMAT_FILE: MSMg01no380_e17.b1 PHD_FILE: MSMg01no380_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:19 2005CHROMAT_FILE: MSMg01no380_e17.g1 PHD_FILE: MSMg01no380_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTTATCACAGTAGTCTGGAACCCCATCATCATCCTCAGCCCGAGCCTGTC
CGGGAAGCCTTTGAGTCTCTGCCATCCTTTCTCCCTTCTCTTCTTTGTTT
TGCAAAGGGCAGGCTTCAAAGAGGCTGCTGATGAAATGCCAGGGCTTCCC
TTGAAAGTAGAAGTCACAGCTCTAAGCCAGGCAAGGTAGATATTTGCTTT
CATAAACCCAAGGCCAGGGGCCAGCCCCTTGGCCCTAGGCTTGGACCTTC
CTGCCCACTGCCCTAGGAGAGGAAGGAAAAGGAGCAAGAGCTGCCCTGAG
TGCAGGAGGCACACTGAGGGCTAGGCCTGCCAACTCCCCAGGTTGTCCCC
TGCAGGAGGCCTCCACTTCCAGAATGAAGGCGACCTTTAAGGGAGAGCAC
AGGGCTTTGATGTCTCCCCCCTTTCCATCCTGGGCACTTTGTAGTCAGCC
TGCTTCACTCATGACCAGCCTTAATAATCAGATTCCAGGCCTGACAAGAT
GCTGGAGGCTGATGGAAGACTGGGAGTGCTGGGATAAATATTTGATGAGA
GGTAGCCATTATCAGCAAGCATGTANGGGGTAAGGCAGCTGCCCACAAGG
TGGTTGTGTTTGGTAAAAGGCTTCTTTCCAAAATTAATTAACTTAAAAGA
AACCCCTTAATGGCGGGGATTAAACTCTACTCCCCAAATGGCTGGGGGTT
TTTCCTAAATAAAACACCCCCCCCAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACAGTCATCTATTGGATGGAACGCAGGGC
CCCTAAAGAAGGATCTAGAGAAAGGAACCAAGGAGCTAAAGGGGTCAGTA
ACCCTATAGGAGGATCAACAATATGAACTAACCAGTACCACACAGAACTG
TGTCTCTAGTTGCATATGTGGCAGAGGATGGCCTAGTCGGTCATCAATGG
GAGGAGAGGCCCTTGGTCTTTCGAAGATCATATGCCCCAGTACAGGGGAA
TGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGCGGGGGA
AGGGTATAGGGGACTTTGGGGATAACATTTGAAATGTAATTGAAGAAAAT
ATCTCCCACCCTGCATTTTTTTAACATAAAATAATTTGGCAGAGGTTGGT
TTATGGTGATTCACTCCCTGTGTACCCCCCTTCGCTGGCATTCTTTCGGA
TTTCTCCCTCTGATTGTTGATTTTCCTTCTTCTCGCCTTTTTCCTCTACT
ATATTTTCTCCTATTTCCTCTCCTGCTTTATTTTTGTCTTCGCCCTACTT
ACCTATCTTTATATTCTCTCTTTCTTTTTTTTTTTCTCTACCTTTTTCTT
ACTCTTACTTCCTCCCCCCCTTTTCTCTTCCTCCTCTGCTTTCCCTATCC
CTCCCTCCACTTTTTCTCCCTCTTTCTTTTTTTCCTTGCTTTTTTCTACC
TCCTTTTTTTCCTCCCCTTTTTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e17.b1 MSMg01no380_e17.b1 CHROMAT_FILE:
MSMg01no380_e17.b1 PHD_FILE: MSMg01no380_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:19 2005
         (503 letters)



>mm_chr13_36629810_36630712
          Length = 903

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tctggaaccccatcatcatcctcagcccgagcctgtccgggaagcctttgagtctctgcc 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctggaaccccatcatcatccccagcccgagcctgtccgggaagcctttgagtctctgcc 264

                                                                       
Query: 65  atcctttctcccttctcttctttgttttgcaaagggcaggcttcaaagaggctgctgatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcctttctcccttctcttctttgttttgcaaagggcaggcttcaaagaggctgctgatg 324

                                                                       
Query: 125 aaatgccagggcttcccttgaaagtagaagtcacagctctaagccaggcaaggtagatat 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatgccagggcttcccttgaaagtggaagtcacagctctaagccaggcaaggtagatat 384

                                                                       
Query: 185 ttgctttcataaacccaaggccaggggccagccccttggccctaggcttggaccttcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgctttcataaacccaaggccaggggccagccccttggccctaggcttggaccttcctg 444

                                                                       
Query: 245 cccactgccctaggagaggaaggaaaaggagcaagagctgccctgagtgcaggaggcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 cccactgccctaggagaggaaggaaaaggagcaagagctgccctgagtgcaagaggcaca 504

                                                                       
Query: 305 ctgagggctaggcctgccaactccccaggttgtcccctgcaggaggcctccacttccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgagggctaggcctgccaactccccaggttgtcccctgcaggaggcctccacttccaga 564

                                                                       
Query: 365 atgaaggcgacctttaagggagagcacagggctttgatgtctcccccctttccatcctgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgaaggcgacctttaagggagagcacagggctttgatgtctcccccctttccatcctgg 624

                                                                       
Query: 425 gcactttgtagtcagcctgcttcactcatgaccagccttaataatcagattccaggcctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcactttgtagtcagcctgcttcactcatgaccagccttaataatcagattccaggcctg 684

                              
Query: 485 acaagatgctggaggctga 503
           |||||||||||||||||||
Sbjct: 685 acaagatgctggaggctga 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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