BAC Information

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BAC

Clone NameMSMg01-380I06
Chromosome13 (Build37)
Map Location 101,527,592 - 101,528,013
singlet/doubletsinglet
Overlap genenone
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36
Downstream geneCenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I06.T7 (MSMg01no380_i06.b1)MSMg01-380I06.TJ (MSMg01no380_i06.g1)
ACCAG484873AG484874
length774764
length of high quality
(start - end)
248 (59 - 306)431 (62 - 492)
definitionCHROMAT_FILE: MSMg01no380_i06.b1 PHD_FILE: MSMg01no380_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:37 2005CHROMAT_FILE: MSMg01no380_i06.g1 PHD_FILE: MSMg01no380_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTAAATCGAGAGAAGCCGCGGAATTCTCATGTTTTT
CCCAACAGCATCTACTGGTGATATAAGCAGAGTACCCCCTGTGTCATTAG
TATACACACACACACACACACACACACACACACATCATTAGTGTATACAC
ACACACACACATAACAGAAGAATGGGGCTGGAGAGATGGTTCAGTGGGTA
AGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
ACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGT
GTGTCTGATTTTTTCTACAATGTACTTACATATAATAATAAATAAATCTT
TAATAAAAAAAAAAATCTGAAGAATGGACATACTTATGTTGAATAAGCAT
ATGCCCCATGTAAGTAGGGCTGGGCAGACAAGCCAGTTGATAATGTGCTT
GCTTTGCAAGAATGAGGACCTGAGTCCAATGCCTAGAATTTATAATTTAA
AATAGGCTTATGTCCTGTCTTGTGCCTGTAATCCTAGCCCTCGGAAGTAG
ACTTTCGGCCCCCTATTGCAGGCCATTGACAGACCCTGTTGACTAATTGG
TGGGTATTCACTTGATTCTTTTATACCTAACGTTGCCTCCCTGACTTCTT
TCTGTCTGGGGTTCCACGGGATGGTGAACTCTTCTTTTTCATTCCCCCAC
CAATTTCTTTCCCTCCTTCCCTCTTTTCCCCCCCCCTTTTTGTTTCTGTT
TCTCTTCACACTCCCTCCACCCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTATCCCCTTTGGGGCCCTGAATCCTTCCTCCTCTTCCA
TAAGAGTCTCAAAACTATGCACTGTTTGGCTGTGGGTGTCTGTATCTGTC
TGAATCAGCTCCTCAGAAGAGAATCTTACAGCATAGATTTCATTAGGAAA
CTTGCAGTCTATCTGTACACAAACTAAAGACAACCTAAACTAGGGACTTA
GGTTGCTGGCAGCTTTCGCTGTAAGAACTTGTGTATGTGGCTTCGGACCT
CATTCATTGTTTCCCTATACATAGAGCTGAAGCCGGTGCACCAACTGCTA
ACACTTCCATCGTTCACTAACCCTAACCCTAACCACTTCCAGCGTGGTTA
TTGGAGAGGATGCTCCAGTAAAAGGAATCCAGTTTAAGTGTATGTAAAGG
AAGGGGCTGGTGGCCAATTCATACACTAGGATGACAGGAGAATCACCACT
AGAAAACAAGCCACTGATCACATAAGGATCTAGAGCAGAGTATGCAGCCT
GACTGAGGAGTACAGCTTAGAGCAGGCTGCCTGACGCATGAGGTCAGTTA
TAGCATGCTTCCTGACTCCAGCAGGTCCCCTATATTAGGCTTCTTGTACT
AGTATCTCCCCCGCGCTTCTTGTTTATCGGTTTTTATCCTTCTTCCTCTC
TCCAACCTTTTCTGCCTTTTTTCCTCTATAATTTTTTTCTTCTCGCTTTT
CTACTTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i06.g1 MSMg01no380_i06.g1 CHROMAT_FILE:
MSMg01no380_i06.g1 PHD_FILE: MSMg01no380_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:37 2005
         (431 letters)



>mm_chr13_101527267_101528097
          Length = 831

 Score =  629 bits (325), Expect = 0.0
 Identities = 401/433 (92%), Gaps = 13/433 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcccctttggggccctgaatccttcctcctcttccataagagtctcaaaa--ctatg 58
           ||||||||||||||| |||  ||         |||||||||||| || | | |  |||||
Sbjct: 747 ctatcccctttggggtcct--at---------tcttccataagaatcccgagactctatg 699

                                                                       
Query: 59  cactgtttggctgtgggtgtctgtatctgtctgaatcagctcctcagaagagaatcttac 118
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 698 cactgtttggctgtgggtgtctgtatctgtctgaatcagctcctcagaggagaatcttac 639

                                                                       
Query: 119 agcatagatttcattaggaaacttgcagtctatctgtacacaaactaaagacaacctaaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 638 agcatagatttcattaggaaacttgcagtctatctgtacacaaactaaaggcaacctaga 579

                                                                       
Query: 179 ctagggacttaggttgctggcagctttcgctgtaagaacttgtgtatgtggcttcggacc 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctaggggcttaggttgctggcagctttcgctgtaagaacttgtgtatgtggcttcggacc 519

                                                                       
Query: 239 tcattcattgtttccctatacatagagctgaagccggtgcaccaactgctaacacttcca 298
           ||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 tcattcattgcatccgtatacatagagctgaagccggtgcaccaactgctaacgcttcca 459

                                                                       
Query: 299 tcgttcactaaccctaaccctaaccacttccagcgtggttattggagaggatgctccagt 358
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 458 gcgttcactaaccctaaccctaaccacttccagcgtggttattgaagaggatgctccagt 399

                                                                       
Query: 359 aaaaggaatccagtttaagtgtatgtaaaggaaggggctggtggccaattcatacactag 418
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 398 aaaaggaatccggtttaagtgtatgtaaaggaaggggctggtgaccaattcatacacaag 339

                        
Query: 419 gatgacaggagaa 431
           |||||| ||||||
Sbjct: 338 gatgacgggagaa 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)