BAC Information

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BAC

Clone NameMSMg01-381P14
Chromosome13 (Build37)
Map Location 6,486,898 - 6,487,309
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream genePitrm1, Pfkp, LOC100039532, LOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381P14.T7 (MSMg01no381_p14.b1)MSMg01-381P14.TJ (MSMg01no381_p14.g1)
ACCAG485987AG485988
length1,321755
length of high quality
(start - end)		---498 (69 - 566)
definitionCHROMAT_FILE: MSMg01no381_p14.b1 PHD_FILE: MSMg01no381_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:33 2005CHROMAT_FILE: MSMg01no381_p14.g1 PHD_FILE: MSMg01no381_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACTGTAAGATCGCGCANCTCGTGCTGTCTCATCGCCACGCGCCTTGTG
AGTGAGGAACACGATGAATTACGCCATTATAGACTTATTAATATCAGCCG
CCGCGGTAAGCGCCTCTCAACCAACCACTATTAGTGATGACATACACCGC
CCGGTTGAACCACATATTAGCCACCAACGTNTGAAGTCATGGCACTGTAT
TGTCAACCAACGGAGCGGAACGGTTACACCTCGAACCGACAACGAATAAA
TTGGGCGGATACGACGCGGGTCACCATAAACAGATGGTGCGGGCGCGAAT
ATATCTAACCCCAACGTATTGCGCAAACAGCGCGGTATGGCACCACACAT
TATCCATCCCGTGGATTGCTGTGTTATTTGCACACGTTGGAAACAACTCG
TGACGTCANNAGAACTGTAGTCATGTGTTTGTGATACGGACCTNCAAGCC
CGCGCCCAATGCGAATAGGTAATCACCAACCTGTTTTATATTATATGCGG
CCGAACACGTGGACACCGCGCAACTTCAACACAACACTAGTGTATTTCGT
CGCCCAAAACTATATATCGCTTTTATACTTTATATAATATGACCACGATA
GAGTGTTTATTATTAACAAACATGCACGATCACGCTCGATCTGGTTGGAT
TCGATCGACCAATGTAAACCACACAGGGGCGGAGAAGAGAAACTATCCGT
ATTATTAATCTTTCCTCCTAAACATAGCAATCTACGTCGGCAACTGCCAA
TTACGTATACCCCGCACTCAGGCCTCAGCGCGCCGTATACGTTGGATTCC
ACTGCCGGCCCCATCAAACTGTGCGACCGCGCGTCTCCGCATGTCTACCT
NTTCTACGACTACACCGTGACGACTANTATCGCCGCACGTAATACACAAC
ACTCNACCACCGACATACTTGACGTGTACGCAAATATACGAACTGGCACA
AAGCAAGATCTCCTAACGAACCGTATATCACCAGTTCGAGATGTGATACA
TAACACAGCGATAACAATAGAGGGGTACTACGAAGCTATATAAGACAGGC
TAGCAATAACTACCCGCACCACGTGCCACGATGTAACACANTATGCAAGA
ACGCCACACTGTATCTTATGAACCCGAGTTTATAGAGTGGACAGCAATCC
NACACGCGCTATTNCTCGATCGCAAGGACGGGCGGCGGTTATTGACCAGA
CATGCGNCACAGTCCCCCTCTAACGTATTATTCTCCGCCACACCCCATGA
TATCCGCCACGCCTTCGTTTNTNATCACGCGCGCATAGAGTTATACACAT
TATGTTCGGTCCCCGTATAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCTTGGCTCATCGCTTTAGAGGGTGACTCCA
TCATCTTAGGGAAGGCATGGCAGAGCACCGCTGTGACAGCAAGAGCATGT
GGCAGAGCTACTCATGCAGTAGCTGGAACAGGAAGCAGAGGAAACATAAC
AGGAAGTTGCTAAGATTAATATACCTGAGAAGTCTTCCTCTAGCTAGGAT
GCACTCCCTGAAGGTTTTCACAGCCTCCCAAAGCAGCAGCCCCAGCCCAG
GCAGTGTGTTCAAGAATTTGAGCCCATGAAGGACATTTCATCCAAATCAT
AACACTATAAAATACTGACACTCATGCTCTTTTACTGTTACCTTTGCATA
TGATGCTGAGTAAATTAGGAAATGCCATTTTCATCGTAGTAAAAGAAGCT
ATGATATGCTTAGTTCATGCCCTACATGACAATAAGAATGTCAGTAAATG
GTGTTGCTGATGGTGCTTTCTGTGGATCCCGTCCCTGTGGTTGACATGTA
TGCACTGGTGGTCTTGGGATGTGGAGAAGCTGGGGATCAGGNTCTTGGGT
GGAGGTGAGTAAGGTGTTATNNNTGTTNNNNTTGTNTGTTNTTTAGTCTC
TCTTTTTTTCTTTTCTTTGTCCCAATTATCCCCCTTCCCTCTCCCTCCCT
CTCATTTCATCCTCTTTACTTTGCTCCTTTTCCCTCTCTCCTCCCTCTAC
CTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_p14.g1 MSMg01no381_p14.g1 CHROMAT_FILE:
MSMg01no381_p14.g1 PHD_FILE: MSMg01no381_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:33 2005
         (498 letters)



>mm_chr13_6486412_6487309
          Length = 898

 Score =  789 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 87  gagctactcatgcagtagctggaacaggaagcagaggaaacataacaggaagttgctaag 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gagctactcatgcagtagctggaacaggaagcagaggaaacataacaggaagttgctaag 839

                                                                       
Query: 147 attaatatacctgagaagtcttcctctagctaggatgcactccctgaaggttttcacagc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 attaatatacctgagaagtcttcctctagctaggatgcactccctgaaggttttcacagc 779

                                                                       
Query: 207 ctcccaaagcagcagccccagcccaggcagtgtgttcaagaatttgagcccatgaaggac 266
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctcccaaagcagcagccctagcccaggcagtgtgttcaagaatttgagcccatgaaggac 719

                                                                       
Query: 267 atttcatccaaatcataacactataaaatactgacactcatgctcttttactgttacctt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atttcatccaaatcataacactataaaatactgacactcatgctcttttactgttacctt 659

                                                                       
Query: 327 tgcatatgatgctgagtaaattaggaaatgccattttcatcgtagtaaaagaagctatga 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgcatatgatgctgagtaaattaggaaatgccattttcatcgtagtaaaagaagctatga 599

                                                                       
Query: 387 tatgcttagttcatgccctacatgacaataagaatgtcagtaaatggtgttgctgatggt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tatgcttagttcatgccctacatgacaataagaatgtcagtaaatggtgttgctgatggt 539

                                                               
Query: 447 gctttctgtggatcccgtccctgtggttgacatgtatgcactggtggtcttg 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gctttctgtggatcccgtccctgtggttgacatgtatgcactggtggtcttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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