BAC Information

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BAC

Clone NameMSMg01-383B19
Chromosome13 (Build37)
Map Location 52,970,602 - 52,971,066
singlet/doubletsinglet
Overlap geneAuh
Upstream geneLOC100040321, Diras2, LOC100040572, Syk
Downstream geneNfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383B19.T7 (MSMg01no383_b19.b1)MSMg01-383B19.TJ (MSMg01no383_b19.g1)
ACCAG486857AG486858
length761656
length of high quality
(start - end)
472 (41 - 512)152 (76 - 227)
definitionCHROMAT_FILE: MSMg01no383_b19.b1 PHD_FILE: MSMg01no383_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:03 2005CHROMAT_FILE: MSMg01no383_b19.g1 PHD_FILE: MSMg01no383_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCTGTATAGCAGACTAGCCTGAAACTCAGATCCGCCTGCCTCTGCTCC
CGAGTGATGGGCCTACAGGCGTGCGCTACCACAGCCCAGCAGTTCCCCCA
TTCTTCACATCAATCAAAGATCTGCATGTGGTGATACTGGGGAAGCCCAT
CATGTCTGCTCCTCAGTGGGCTGTGCTTGAGCTCCTGTCTGCAGCTGACA
GAGACCAGGCTAGTTTCCTGCTTTGTTTAGCGTGTTGAGTTTTCTGGTTT
TTAATCTGTGGTATAAGGCACATCCCTACCTGTCCTCACATTATGCATTG
AAAAGACTTTCTCTTCTGGCTTCGGGCCTCTAAGGTAGCTACATCTCCAT
AAAATTAGATCAGACTGACATTCTGTTTCCTGAGCATATTTGTCTGGCTT
GGTGCCAGGGCCACGTGGTGAATCTTGAAAACACCCACGTCGGTTTTTCT
ACTTTTTTTGGCCAGTTGTTTTGCTGAATCCTAGTCCTTTTCATTTCCAC
ATGGTAGTCAATTTCTACCAATTCATTCCTGTTGAGTGCTGGGGATTAAA
CTGAGTACCTGCCCCATGGCAGAGTCACTTAGGTACTTTCTCCTGTTAAG
GATGGAAGACATTTACTATTTACTGGATAACCCGTTTTTGCCAAAAGGTT
CTCAGGGTTTCCCGGTCCTCCACGGGGCACTTAAAATAGTTGGTGACTGC
AGAATACCCTG
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGACACCCTGGTCTACAGAGTGA
GTTCCAGGACACTGTGAACACAGAGAAACTGGTCTTGAAAAACAAACAAA
CAAACAACACATAAACTTAGAAGGATCTCACGGCCCTTGCCGAGGTTGTA
TGAGCATAGGAATAGCTGCTGCCCACTGGCCAAAGTACCCGAGNATCATA
CGGAGCTCCCAGGGTACGGCTTTTCCTGAAGGTCACCCATGCTTGGGTGG
NAATTTCAATGATGTAAGGGCCTTCAAGTCACCCTTAATTCCTGGAGGGA
AACCCCCCTCACCCCCCAATGGGGGGGGGAACCCCCCAAAAAACCTCCCC
CCGTTGGAAAAAAAGCTAAACCCTTGGGGCAAAAAAAAAAATGTGTGCTT
TATCCTCCCCCCCCGGGAGGGAAAAAAAGAAAATTTTTTTTTCTCCCCCC
CCCCCCCCCCCCAAAAAAAAAAACCCCCCCGGGNGCTTTTTTTTGTGTTG
GCCTCTCCCCAAAAAAAAAATAAACCCCCCCCTCCTTTTTTTTTTGAGAA
GGAGNCACCCCCCCCCCCAAACAAAAAAGNGATTTTNNTTTGTTTTTGCA
GGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_b19.b1 MSMg01no383_b19.b1 CHROMAT_FILE:
MSMg01no383_b19.b1 PHD_FILE: MSMg01no383_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:03 2005
         (472 letters)



>mm_chr13_52970302_52971172
          Length = 871

 Score =  785 bits (406), Expect = 0.0
 Identities = 451/466 (96%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtatagcagactagcctgaaactcagatccgcctgcctctgctcccga 63
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggaattcactctgtagagcggactagcctgaaactcagatccgcctgcctctgctcccga 706

                                                                       
Query: 64  gtgatgggcctacaggcgtgcgctaccacagcccagcagttcccccattcttcacatcaa 123
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 705 gtgatggacctacaggcgtgcgccaccacagcccagcagttcccccattcttcacatcaa 646

                                                                       
Query: 124 tcaaagatctgcatgtggtgatactggggaagcccatcatgtctgctcctcagtgggctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 645 tcaaagatctgcatgtggtgatactggggaagcccatcatgtctgctcctcggtgggctg 586

                                                                       
Query: 184 tgcttgagctcctgtctgcagctgacagagaccaggctagtttcctgctttgtttagcgt 243
           |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct: 585 tgcttgagctcctgtctgcagctgacagagaccaggctggcttcctgcttcgtttagcgt 526

                                                                       
Query: 244 gttgagttttctggtttttaatctgtggtataaggcacatccctacctgtcctcacatta 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gttgagttttctggttttt-atctgtggtataaggcacatccctacctgtcctcacatta 467

                                                                       
Query: 304 tgcattgaaaagactttctcttctggcttcgggcctctaaggtagctacatctccataaa 363
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 466 tgcattgaaaagactctctcttctggcttcgggtctctaaggtagctacatctccataaa 407

                                                                       
Query: 364 attagatcagactgacattctgtttcctgagcatatttgtctggcttggtgccagggcca 423
           |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 406 attagatcagactggcattctgtttcatgagcgtatttgtctggcttggtgccagggcca 347

                                                         
Query: 424 cgtggtgaatcttgaaaacacccacgtcggtttttctacttttttt 469
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 346 cgtggtgaatcttgaaaacacccacatcggtttttctacttttttt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space:   397782
Effective search space used:   397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)