BAC Information

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BAC

Clone NameMSMg01-383D05
Chromosome13 (Build37)
Map Location 107,591,153 - 107,773,171
singlet/doubletdoublet
Overlap geneIpo11, Dimt1, Kif2a
Upstream geneEG668025, Olfr717-ps1, LOC631097, EG620949
Downstream geneLOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383D05.T7 (MSMg01no383_d05.b1)MSMg01-383D05.TJ (MSMg01no383_d05.g1)
ACCAG486925AG486926
length765764
length of high quality
(start - end)		495 (40 - 534)540 (66 - 605)
definitionCHROMAT_FILE: MSMg01no383_d05.b1 PHD_FILE: MSMg01no383_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:11 2005CHROMAT_FILE: MSMg01no383_d05.g1 PHD_FILE: MSMg01no383_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,591,153 - 107,591,643)(107,772,634 - 107,773,171)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGACAACTTCCAGAATGGGTTAGATGGAACACATTAGAATAAGGACCAAT
CTCATCATGTTAAATGAACAGGAGTAAATAAATTATTAATTTAGCTAATT
ACTATCCACTTACCATTCTTTCATAGTGTTTTAGATAATTAATTCAGTAA
TTTAATAATGGAAAATATTCTCTCTTGCCACTCATTTTACCATTTAAGTA
GAATGACCACAATAAAGTGGAGTGGGACATTCAGATGTGTTATATGGATT
AATGTTATTAAATCAGAAAACAAGTCTGCTAGATAATTAAGTATGATGAT
TTAGTAATATCTTTGATTCTGTCATTCCTCAGAAATATAACCAGTATCTT
GTTTGTCAACTCTGTAAGAGAATATACCATAAAACCAAAGATGTGCCACA
CACACTGACCCTACAGTGCAGAGATACCAGGTAGTGCAAACAACTGAAGA
GAAAGAGTGAAGGAAAATTAGATTTCTATCTGTAACCTAAATGTTACCTT
TGGATACGCTGAGTCCTGACTGTCCTACCCGTGTTTGAGCCAGTCTCACT
CTGTAGAACAAGCTGGCCTCTTCCTGCTTCAAGCTCCCAAGTGTTCAAAG
CACAGGTATCCACCTCCTACACCACCGAATGCCCCTGGGTCCTGGCTGCC
AGCTTACAAAGGGACTACGAAGCCTTGAACCCTTTACGGGGAAACTGGTT
CCCTAAAGGTCCCTA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGATAGTCTGGATGATGTTGTAAGACTTGATCT
AAAAACACATGGAAGCCAGGCGTGGTGGCGCACGCCTGGTCTACAGAGTG
AGTTTCAGGAAAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCA
ACAAAACAAAACCCACATGGAGCTGGTTTAGTAGGATTGCCTACTGCCAG
TCCTGATGATCCCTGAGAGCCAGTGGTGGAGGATGGGAGCTGACTCTTAA
CAGATTTTTCTCTTATTTCCACATGCATACCACACCCTAGTGTGTGTGCA
TACAGTCACACACAAAATTAAAATAGTTTTTTAGAAACCTCAAATCATTT
TTTTTTTAATTTGGTTCATTAGATTAACTGCTGTGAAAATTACTGAACAT
TGATTTTTGTTTATTCTTTTAGAAACTCAAATGAAAGATCTTGATGTGAT
CACAATCCCTAGTAAAGATGTTGTGATGGTCCACGAACCCAAACAGAAAG
TAGACTTAACAAGGTACTTAGAAAATCAGACATTTCGGTTTGATTACGCC
TTCGATGACTCAGCTCCTAATGAAATGGTTTACAGGTAAGTGAATTTGTT
TTAAAGAAAAATTATTTTCTTTACATTTTATTACTTTCTTGACAACTTAA
TGTTGTTTTTATCACAACCCTCCCAGGAGTGAAAATGCTTTCCTATTCCG
ACATTAATTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_d05.b1 MSMg01no383_d05.b1 CHROMAT_FILE:
MSMg01no383_d05.b1 PHD_FILE: MSMg01no383_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:11 2005
         (495 letters)



>mm_chr13_107590949_107591843
          Length = 895

 Score =  926 bits (479), Expect = 0.0
 Identities = 488/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagacaacttccagaatgggttagatggaacacattagaataaggaccaatctc 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacaacttccagaatggattagatggaacacattagaataaggaccaatctc 264

                                                                       
Query: 65  atcatgttaaatgaacaggagtaaataaattattaatttagctaattactatccacttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcatgttaaatgaacaggagtaaataaattattaatttagctaattactatccacttac 324

                                                                       
Query: 125 cattctttcatagtgttttagataattaattcagtaatttaataatggaaaatattctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattctttcatagtgttttagataattaattcagtaatttaataatggaaaatattctct 384

                                                                       
Query: 185 cttgccactcattttaccatttaagtagaatgaccacaataaagtggagtgggacattca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgccactcattttaccatttaagtagaatgaccacaataaagtggagtgggacattca 444

                                                                       
Query: 245 gatgtgttatatggattaatgttattaaatcagaaaacaagtctgctagataattaagta 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gatgtgttatatggattaatgttattaaattagaaaacaagtctgctagataattaagta 504

                                                                       
Query: 305 tgatgatttagtaatatctttgattctgtcattcctcagaaatataaccagtatcttgtt 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 tgatgatttagtaatatctttgattctgtcattcctcagaaatataactagtatcttgtt 564

                                                                       
Query: 365 tgtcaactctgtaagagaatataccataaaaccaaagatgtgccacacacactgacccta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcaactctgtaagagaatataccataaaaccaaagatgtgccacacacactgacccta 624

                                                                       
Query: 425 cagtgcagagataccaggtagtgcaaacaactgaagagaaagagtgaaggaaaattagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgcagagataccaggtagtgcaaacaactgaagagaaagagtgaaggaaaattagat 684

                      
Query: 485 ttctatctgta 495
           |||||||||||
Sbjct: 685 ttctatctgta 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_d05.g1 MSMg01no383_d05.g1 CHROMAT_FILE:
MSMg01no383_d05.g1 PHD_FILE: MSMg01no383_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:12 2005
         (540 letters)



>mm_chr13_107772298_107773235
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 536/540 (99%), Gaps = 2/540 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagtctggatgatgttgtaagacttgatctaaaaacacatggaagccaggcgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 caggatagtctggatgatgttgtaagacttgatctaaaaacacatggaagccaggcgtgg 815

                                                                       
Query: 61  tggcgcacgcctggtctacagagtgagtttcaggaaagccagggctacacagagaaaccc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tagcgcacgcctggtctacagagtgagtttcaggaaagccagggctacacagagaaaccc 755

                                                                       
Query: 121 tgtcttgaaaaaccaacaaaacaaaacccacatggagctggtttagtaggattgcctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgtcttgaaaaaccaacaaaacaaaacccacatggagctggtttagtaggattgcctact 695

                                                                       
Query: 181 gccagtcctgatgatccctgagagccagtggtggaggatgggagctgactcttaacagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gccagtcctgatgatccctgagagccagtggtggaggatgggagctgactcttaacagat 635

                                                                       
Query: 241 ttttctcttatttccacatgcataccacaccctagtgtgtgtgcatacagtcacacacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttttctcttatttccacatgcataccacaccctagtgtgtgtgcatacagtcacacacaa 575

                                                                       
Query: 301 aattaaaatagttttttagaaacctcaaatcattttttttttaatttggttcattagatt 360
           ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||
Sbjct: 574 aattaaaatagttttttagaaacctcaaatca--ttttttttaatttcgttcattagatt 517

                                                                       
Query: 361 aactgctgtgaaaattactgaacattgatttttgtttattcttttagaaactcaaatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aactgctgtgaaaattactgaacattgatttttgtttattcttttagaaactcaaatgaa 457

                                                                       
Query: 421 agatcttgatgtgatcacaatccctagtaaagatgttgtgatggtccacgaacccaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agatcttgatgtgatcacaatccctagtaaagatgttgtgatggtccacgaacccaaaca 397

                                                                       
Query: 481 gaaagtagacttaacaaggtacttagaaaatcagacatttcggtttgattacgccttcga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaagtagacttaacaaggtacttagaaaatcagacatttcggtttgattacgccttcga 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space:   491840
Effective search space used:   491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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