Query= MSMg01no383_i12.b1 MSMg01no383_i12.b1 CHROMAT_FILE:
MSMg01no383_i12.b1 PHD_FILE: MSMg01no383_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:36 2005
(263 letters)
>mm_chr13_41294097_41294762
Length = 666
Score = 416 bits (215), Expect = e-121
Identities = 248/263 (94%), Gaps = 9/263 (3%)
Strand = Plus / Plus
Query: 7 gaattctgatgctgtattctgaacctctaggtgtctcagaggggagaaggaaaggcattc 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgatgctgaattctgaacctctaggtgtctcagaggggagaaggaaaggcattc 266
Query: 67 aggagtcccagatgcaggcacacagagggacagctcctctgggaaacactgatgaccagg 126
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 267 aggagtcccagatgcaggcacacagagg-acagctcctctgggaaacactgatgaccatg 325
Query: 127 gtccccagtggctc----atatggtaggaaggcagacaacactagggaaatactgggatg 182
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtctccagtggctcgctcatatggtaggaaggcagacaacactagggaaatactgggatg 385
Query: 183 gcagcagaaagcagatcggtgtttgcttgaggaccatgagtgtgtgtgtgtgt----gtg 238
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct: 386 gcagcagaaagcagatcggtgtttgcttgaggaccatgggtgtgtatgtgtgtatgagtg 445
Query: 239 tgtgtgtgtgtgtgtgtgtgtgt 261
| |||||||||||||||||||||
Sbjct: 446 tatgtgtgtgtgtgtgtgtgtgt 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 666
Length adjustment: 9
Effective length of query: 254
Effective length of database: 657
Effective search space: 166878
Effective search space used: 166878
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no383_i12.g1 MSMg01no383_i12.g1 CHROMAT_FILE:
MSMg01no383_i12.g1 PHD_FILE: MSMg01no383_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:36 2005
(479 letters)
>mm_chr13_41466565_41467443
Length = 879
Score = 919 bits (475), Expect = 0.0
Identities = 478/479 (99%)
Strand = Plus / Minus
Query: 1 tgctgcttactagactatttcattccatcttacggaattttatgataaaatatcagcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgctgcttactagactatttcattccatcttacggaattttatgataaaatatcagcaag 620
Query: 61 ctcataaagaaggctgttttaaggtccgtaatctttctaaccataacaaaaggggtggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcataaagaaggctgttttaaggtccgtaatctttctaaccataacaaaaggggtggta 560
Query: 121 actatattgtacaaggctgcgatggaaaaatgtgctaaagtatttccataaatcaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actatattgtacaaggctgcgatggaaaaatgtgctaaagtatttccataaatcaaatgt 500
Query: 181 agcactttggcattagctagaaagcattaaactttagcagattagaaccagatgatttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcactttggcattagctagaaagcattaaactttagcagattagaaccagatgatttta 440
Query: 241 aaatagaaacttacataacttgatggtgtgatttttttttccctctccccagcacaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaatagaaacttacataacttgatggtgtgatttttttttccctctccccagcacaaagt 380
Query: 301 ttatcttcatgaagttaccttggctgctctgtaataggtatttaagaagtaagggcagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttatcttcatgaagttaccttggctgctctgtaataggtatttaagaagtaagggcagtg 320
Query: 361 tctgggtattattcatctttgtggctctcacggtgcctactgttatgtcgagcagttggg 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 319 tctgggtattattcatctttgtggctcccacggtgcctactgttatgtcgagcagttggg 260
Query: 421 attggtggaggggagaaatatgaaatctcagaggctattaacaaggacaaaataatcgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attggtggaggggagaaatatgaaatctcagaggctattaacaaggacaaaataatcgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
