BAC Information

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BAC

Clone NameMSMg01-383J06
Chromosome13 (Build37)
Map Location 96,606,009 - 96,761,524
singlet/doubletdoublet
Overlap geneIqgap2, Sv2c
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, F2rl2
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383J06.T7 (MSMg01no383_j06.b1)MSMg01-383J06.TJ (MSMg01no383_j06.g1)
ACCAG487215AG487216
length686769
length of high quality
(start - end)		167 (66 - 232)514 (68 - 581)
definitionCHROMAT_FILE: MSMg01no383_j06.b1 PHD_FILE: MSMg01no383_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:39 2005CHROMAT_FILE: MSMg01no383_j06.g1 PHD_FILE: MSMg01no383_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,761,358 - 96,761,524)(96,606,009 - 96,606,522)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCCACGGCTCACGCGTGGAGAATAACAAAGTTTAGAGTTCTTTAAAGA
GAGGTTATACAAAGCTCTGAGATCATGTGAAATGAACACATTATGGTCTC
TTTGTTCGGCCATAGAATTTCTTCTGCGATTTTATTATGTGAGACTTTTA
AGTCTAGGCTATATAAGATGTTGAAAGCAATCATGGCTTCCCAAAAGCTA
ATCGTATAATTAATGTANCAACCCCAAATAAGCCTCCCCTAACAAATTTT
CCNAAACAAACTAATGCCAATGAATCCGGGGGCCCTAGTTGGAACCCCTT
TGGCGGGAAAAAGGGAAAAATTGGCCAACCCGGGGGGGGGGGGGGGGCCC
CCCTTGGAACCCGGGGGAAAAAATTTTGGCACTCCCTGGGGGGAAAAAGC
CCCTTCGGGGGGTTTCCGGGCCCCCCCAAGAAAAAAGGGCGACGTCCGTG
GGGGGGGGGGGAAGGAAAACGATAACCCCCCTTTTTTGTAAGACACTTCT
TTCGGGAACCTGTTTTTTGGGGGGGGGTTCTTTTCCCGCACTCGGTAAGG
CCTTCCTCCTTGGTGACGACATACCCCGTTTTTTTTTTATATGTGGGGGG
TGGTGGTTCTCCTCATAAGATGGGACGATACGTTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTATTCATACATGTGTGGCAAGAGATGCTGAG
CCATCTTCCCAGCTCTGAAAACTGTATATTCTTAGTCTCTTACTTCAAAG
ACGCTAATTTCTGAAGACGTTTTCTTGAAAGAATCTGGGATTATCTTTAT
GACAAACTCATGAAAAGAGAGAAAAAAAATATTCACTAATGAATTCCAGG
AATACCGAGGAGAATAACACGCTGTAAAGGCTCGTCTTTGCCACTTTTGA
CACACTTATGCAAGTGCATACCACCAGATGTCTGGCCTATACCAGCATTC
ACAGGATACTTTTCCCCTTTTCAGTGGTTTAAAAAAAATCAGAAAGAGGG
TAGAGCAGGTGGCAGTGTCTTTACCATGCAATTTACAGAGCAAAATGAGG
CTTCTCCAAAGGGTTAGACAACCTAGCCAGAGTCACACAGGTCAAGGTAG
GACCAAGAAATCAGGTCTTTCAACTCTGGATCAACTCTTCTGCATCGTGA
CGCTCTTTCCCACTTATGTTAAAAAAACAAAGCACATACCTACAGAGAGG
AATGTATGTCACAAAAAAAAAGCCAGGGCCCCCCACTAATTCTCAGACTT
TGTCACGGGATATGCATCATGTTTGGATGCCTAAGAATCCCTTTCCTTGG
TTTGTCTTTTAAGCAAAAATTTTGCTAATAATCTCGGGCTAACAAAGAAA
CTTTGATGTTTTCGGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_j06.b1 MSMg01no383_j06.b1 CHROMAT_FILE:
MSMg01no383_j06.b1 PHD_FILE: MSMg01no383_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:39 2005
         (167 letters)



>mm_chr13_96761158_96761724
          Length = 567

 Score =  323 bits (167), Expect = 3e-93
 Identities = 167/167 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtggagaataacaaagtttagagttctttaaagagaggttatacaaagctctgagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgtggagaataacaaagtttagagttctttaaagagaggttatacaaagctctgagatca 308

                                                                       
Query: 61  tgtgaaatgaacacattatggtctctttgttcggccatagaatttcttctgcgattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtgaaatgaacacattatggtctctttgttcggccatagaatttcttctgcgattttat 248

                                                          
Query: 121 tatgtgagacttttaagtctaggctatataagatgttgaaagcaatc 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatgtgagacttttaagtctaggctatataagatgttgaaagcaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no383_j06.g1 MSMg01no383_j06.g1 CHROMAT_FILE:
MSMg01no383_j06.g1 PHD_FILE: MSMg01no383_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:39 2005
         (514 letters)



>mm_chr13_96605809_96606722
          Length = 914

 Score =  994 bits (514), Expect = 0.0
 Identities = 514/514 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattcatacatgtgtggcaagagatgctgagccatcttcccagctctgaaaactgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattcatacatgtgtggcaagagatgctgagccatcttcccagctctgaaaactgtat 260

                                                                       
Query: 61  attcttagtctcttacttcaaagacgctaatttctgaagacgttttcttgaaagaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttagtctcttacttcaaagacgctaatttctgaagacgttttcttgaaagaatctg 320

                                                                       
Query: 121 ggattatctttatgacaaactcatgaaaagagagaaaaaaaatattcactaatgaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattatctttatgacaaactcatgaaaagagagaaaaaaaatattcactaatgaattcc 380

                                                                       
Query: 181 aggaataccgaggagaataacacgctgtaaaggctcgtctttgccacttttgacacactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaataccgaggagaataacacgctgtaaaggctcgtctttgccacttttgacacactt 440

                                                                       
Query: 241 atgcaagtgcataccaccagatgtctggcctataccagcattcacaggatacttttcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaagtgcataccaccagatgtctggcctataccagcattcacaggatacttttcccc 500

                                                                       
Query: 301 ttttcagtggtttaaaaaaaatcagaaagagggtagagcaggtggcagtgtctttaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttcagtggtttaaaaaaaatcagaaagagggtagagcaggtggcagtgtctttaccat 560

                                                                       
Query: 361 gcaatttacagagcaaaatgaggcttctccaaagggttagacaacctagccagagtcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatttacagagcaaaatgaggcttctccaaagggttagacaacctagccagagtcaca 620

                                                                       
Query: 421 caggtcaaggtaggaccaagaaatcaggtctttcaactctggatcaactcttctgcatcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggtcaaggtaggaccaagaaatcaggtctttcaactctggatcaactcttctgcatcg 680

                                             
Query: 481 tgacgctctttcccacttatgttaaaaaaacaaa 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacgctctttcccacttatgttaaaaaaacaaa 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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